Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   A6E01_RS10795 Genome accession   NZ_CP016177
Coordinates   2344358..2345383 (-) Length   341 a.a.
NCBI ID   WP_017027200.1    Uniprot ID   -
Organism   Vibrio breoganii strain FF50     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2339358..2350383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6E01_RS10775 (A6E01_10775) csrA 2339433..2339630 (-) 198 WP_004415691.1 carbon storage regulator CsrA -
  A6E01_RS10780 (A6E01_10780) - 2339708..2340880 (-) 1173 WP_065210206.1 aspartate kinase -
  A6E01_RS10785 (A6E01_10785) alaS 2341030..2343621 (-) 2592 WP_065210207.1 alanine--tRNA ligase -
  A6E01_RS10790 (A6E01_10790) recX 2343800..2344252 (-) 453 WP_017027201.1 recombination regulator RecX -
  A6E01_RS10795 (A6E01_10795) recA 2344358..2345383 (-) 1026 WP_017027200.1 recombinase RecA Machinery gene
  A6E01_RS10800 (A6E01_10800) pncC 2345489..2345983 (-) 495 WP_206191624.1 nicotinamide-nucleotide amidase -
  A6E01_RS10805 (A6E01_10805) mutS 2346066..2348633 (+) 2568 WP_017027198.1 DNA mismatch repair protein MutS -
  A6E01_RS10810 (A6E01_10810) rpoS 2348746..2349720 (-) 975 WP_017027197.1 RNA polymerase sigma factor RpoS Regulator

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 36747.14 Da        Isoelectric Point: 5.3147

>NTDB_id=186086 A6E01_RS10795 WP_017027200.1 2344358..2345383(-) (recA) [Vibrio breoganii strain FF50]
MDDNKQKALAAALGQIEKQFGKGSIMRLGDNRTMDVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIA
AAQREGKTCAFIDAEHALDPIYAQKLGVNIDALLVSQPDTGEQALEICDALARSGAIDVLVVDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKDGDEVVGNE
TRIKVVKNKIAAPFKQAETQIMYGQGFNREGELIDLGVKHKLVEKAGAWYSYQGDKIGQGKANAGKFLREHPETALEIDS
KLRAMLLTTAQLEDTKEAEVE

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=186086 A6E01_RS10795 WP_017027200.1 2344358..2345383(-) (recA) [Vibrio breoganii strain FF50]
ATGGACGACAACAAGCAAAAAGCTCTCGCGGCTGCACTTGGCCAAATAGAAAAACAATTCGGTAAAGGCTCAATTATGCG
CCTTGGTGATAACCGCACCATGGACGTAGAAACTATTTCTACTGGCTCACTGTCTCTAGACATCGCTCTGGGTGCTGGTG
GCTTGCCAATGGGACGTATCGTAGAAGTCTACGGCCCTGAATCATCGGGTAAAACAACACTAACGCTAGAGTTGATTGCT
GCAGCTCAACGTGAAGGTAAAACGTGTGCCTTTATCGATGCAGAGCACGCACTTGACCCTATCTATGCGCAAAAGCTTGG
CGTAAACATTGATGCTCTTTTAGTTTCTCAGCCAGATACAGGTGAGCAAGCGTTAGAGATCTGTGACGCACTCGCTCGCT
CTGGCGCTATCGACGTATTGGTTGTCGATTCAGTCGCGGCACTAACACCAAAAGCTGAAATCGAAGGTGAGATGGGCGAC
AGCCACATGGGCCTTCAAGCTCGTATGCTTTCTCAAGCAATGCGTAAGCTAACCGGTAACCTGAAACAATCTAACTGTAT
GTGTATCTTCATCAACCAAATCCGTATGAAGATTGGTGTGATGTTTGGTAACCCAGAGACCACCACTGGTGGTAACGCAC
TTAAGTTCTACGCTTCTGTTCGTCTTGATATCCGTCGTACTGGCGCGATTAAAGATGGTGATGAGGTTGTTGGTAACGAA
ACCCGTATTAAGGTTGTTAAGAACAAGATTGCTGCACCGTTTAAACAAGCTGAAACCCAAATCATGTACGGTCAAGGCTT
TAACCGTGAAGGTGAGTTGATTGATCTAGGTGTGAAGCACAAGCTAGTCGAAAAAGCCGGTGCTTGGTACAGCTACCAAG
GCGACAAGATTGGCCAAGGTAAAGCAAACGCAGGTAAATTCCTTCGTGAGCACCCAGAAACAGCGCTAGAAATCGATAGC
AAGCTACGTGCAATGCTGCTGACTACGGCTCAGCTTGAAGACACTAAAGAGGCTGAGGTAGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

90.39

97.654

0.883
  recA Vibrio cholerae O1 biovar El Tor strain E7946

90.39

97.654

0.883
  recA Pseudomonas stutzeri DSM 10701

73.824

99.707

0.736
  recA Acinetobacter baumannii D1279779

71.014

100

0.718
  recA Acinetobacter baylyi ADP1

71.554

100

0.716
  recA Glaesserella parasuis strain SC1401

70.37

95.015

0.669
  recA Neisseria gonorrhoeae MS11

69.018

95.601

0.66
  recA Neisseria gonorrhoeae MS11

69.018

95.601

0.66
  recA Neisseria gonorrhoeae strain FA1090

69.018

95.601

0.66
  recA Ralstonia pseudosolanacearum GMI1000

69.018

95.601

0.66
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.577

93.548

0.604
  recA Bacillus subtilis subsp. subtilis str. 168

63.75

93.842

0.598
  recA Streptococcus mitis SK321

59.357

100

0.595
  recA Streptococcus pneumoniae Rx1

62.346

95.015

0.592
  recA Streptococcus pneumoniae D39

62.346

95.015

0.592
  recA Streptococcus pneumoniae R6

62.346

95.015

0.592
  recA Streptococcus pneumoniae TIGR4

62.346

95.015

0.592
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.423

97.067

0.587
  recA Helicobacter pylori strain NCTC11637

61.728

95.015

0.587
  recA Streptococcus pyogenes NZ131

61.538

95.308

0.587
  recA Helicobacter pylori 26695

61.42

95.015

0.584
  recA Streptococcus mitis NCTC 12261

61.043

95.601

0.584
  recA Latilactobacillus sakei subsp. sakei 23K

61.491

94.428

0.581
  recA Streptococcus mutans UA159

60.923

95.308

0.581
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.991

94.721

0.578
  recA Lactococcus lactis subsp. cremoris KW2

59.568

95.015

0.566

Multiple sequence alignment