Detailed information NTG0186088

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: A6E01_RS10810
• Genome accession: NZ_CP016177
• Coordinates: 2348746..2349720 (-)
• Length: 324 a.a.
• NCBI ID: WP_017027197.1
• Uniprot ID: A0AAJ5JMR0
• Organism: Vibrio breoganii strain FF50
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2343746..2354720

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A6E01_RS10790 (A6E01_10790)	recX	2343800..2344252 (-)	453	WP_017027201.1	recombination regulator RecX	-
A6E01_RS10795 (A6E01_10795)	recA	2344358..2345383 (-)	1026	WP_017027200.1	recombinase RecA	Machinery gene
A6E01_RS10800 (A6E01_10800)	pncC	2345489..2345983 (-)	495	WP_206191624.1	nicotinamide-nucleotide amidase	-
A6E01_RS10805 (A6E01_10805)	mutS	2346066..2348633 (+)	2568	WP_017027198.1	DNA mismatch repair protein MutS	-
A6E01_RS10810 (A6E01_10810)	rpoS	2348746..2349720 (-)	975	WP_017027197.1	RNA polymerase sigma factor RpoS	Regulator
A6E01_RS10815 (A6E01_10815)	nlpD	2349772..2350644 (-)	873	WP_065210209.1	murein hydrolase activator NlpD	-
A6E01_RS10820 (A6E01_10820)	-	2350649..2351275 (-)	627	WP_017027195.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
A6E01_RS10825 (A6E01_10825)	surE	2351276..2352019 (-)	744	WP_065210210.1	5'/3'-nucleotidase SurE	-
A6E01_RS10830 (A6E01_10830)	truD	2352035..2353015 (-)	981	WP_065210211.1	tRNA pseudouridine(13) synthase TruD	-
A6E01_RS10835 (A6E01_10835)	ispF	2353032..2353511 (-)	480	WP_017027192.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
A6E01_RS10840 (A6E01_10840)	ispD	2353508..2354209 (-)	702	WP_082961361.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
A6E01_RS10845 (A6E01_10845)	ftsB	2354232..2354507 (-)	276	WP_017027190.1	cell division protein FtsB	-

Sequence

Protein

• Length: 324 a.a.
• Molecular weight: 37193.12 Da
• Isoelectric Point: 4.6073

>NTDB_id=186088 A6E01_RS10810 WP_017027197.1 2348746..2349720(-) (rpoS) [Vibrio breoganii strain FF50]
MSMDNTAAKVEDLTEDKVSAEVEESSIVEKIETQVKEEFDASTKNLDATQLYLGEIGFSPLLTAEEEVLYARRALRGDEA
ARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRLPI
HVVKELNIYLRTARELSQKLDHEPTAEEIAQQLDKPVDDVSKMLRLNERVSSVDTPIGGDGDKALLDIIPDINNSDPEVS
TQDDDIKHSLIDWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILLKQGLNMESLFN
FDSE

Nucleotide

• Length: 975 bp

>NTDB_id=186088 A6E01_RS10810 WP_017027197.1 2348746..2349720(-) (rpoS) [Vibrio breoganii strain FF50]
ATGAGTATGGATAACACTGCAGCAAAAGTGGAAGACCTAACAGAAGACAAAGTTAGTGCGGAAGTAGAAGAAAGTAGCAT
TGTTGAAAAGATAGAAACTCAGGTAAAAGAAGAGTTTGATGCCTCAACAAAGAATCTAGACGCAACTCAACTTTATCTAG
GCGAAATCGGCTTCTCCCCACTACTAACAGCAGAAGAAGAGGTTCTATACGCAAGACGAGCACTTCGCGGAGACGAAGCA
GCGCGCAAGCGTATGATTGAAAGTAACCTGCGTCTGGTTGTTAAGATCTCGCGTCGTTACAGCAATCGTGGCTTAGCTCT
ATTAGACCTAATTGAAGAGGGGAACCTTGGTCTAATTCGCGCCGTAGAAAAATTCGATCCTGAACGTGGCTTCAGGTTCT
CAACCTACGCAACTTGGTGGATTCGACAAACCATCGAACGTGCCTTGATGAACCAAACCCGCACAATTCGCTTGCCGATC
CACGTGGTTAAAGAGCTGAACATTTATCTGAGAACGGCTCGTGAGTTATCTCAGAAGCTTGACCATGAACCAACAGCCGA
AGAGATTGCTCAGCAACTGGATAAGCCAGTAGATGATGTCAGCAAAATGCTACGTCTTAATGAGCGTGTCAGTTCAGTAG
ATACTCCAATTGGTGGTGACGGTGATAAGGCATTGCTTGATATCATTCCTGACATCAACAACTCAGACCCTGAAGTGTCC
ACTCAAGATGACGATATTAAGCACTCTCTTATCGATTGGCTTGATGAGCTGAATCCAAAACAGAAAGAAGTACTTGCTCG
TCGCTTTGGCTTGCTTGGCTATGAACCGTCTACGTTAGAAGAGGTAGGCCGTGAAATTAACCTAACTCGTGAACGCGTAC
GTCAGATCCAAGTTGAGGGTCTCCGTCGATTGCGTGAGATTCTATTGAAGCAAGGACTGAATATGGAGTCGCTGTTTAAC
TTCGACAGTGAATAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (47-80)

• Sigma-70 region 2 (Sigma70_r2) (85-154)

• Sigma-70 region 3 (Sigma70_r3) (165-238)

• Sigma-70, region 4 (Sigma70_r4) (253-306)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.133	100	0.852