Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   A9C19_RS10940 Genome accession   NZ_CP016020
Coordinates   2266496..2267533 (-) Length   345 a.a.
NCBI ID   WP_072579977.1    Uniprot ID   A0A1L3MSB6
Organism   Bacillus weihaiensis strain Alg07     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2261496..2272533
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A9C19_RS10925 (A9C19_10710) spoVS 2262076..2262336 (-) 261 WP_003211281.1 stage V sporulation protein SpoVS -
  A9C19_RS22760 - 2262772..2262911 (-) 140 Protein_2193 IS5/IS1182 family transposase -
  A9C19_RS10930 (A9C19_10715) - 2263437..2264231 (-) 795 WP_072579975.1 TIGR00282 family metallophosphoesterase -
  A9C19_RS10935 (A9C19_10720) rny 2264390..2265952 (-) 1563 WP_072579976.1 ribonuclease Y -
  A9C19_RS10940 (A9C19_10725) recA 2266496..2267533 (-) 1038 WP_072579977.1 recombinase RecA Machinery gene
  A9C19_RS10945 (A9C19_10730) cinA 2267792..2269033 (-) 1242 WP_099092808.1 competence/damage-inducible protein A Machinery gene
  A9C19_RS10950 (A9C19_10735) pgsA 2269061..2269639 (-) 579 WP_072579979.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  A9C19_RS10955 (A9C19_10740) - 2269753..2270616 (-) 864 WP_072579980.1 helix-turn-helix domain-containing protein -
  A9C19_RS10960 (A9C19_10745) - 2270635..2271426 (-) 792 WP_072579981.1 DUF3388 domain-containing protein -
  A9C19_RS10965 (A9C19_10750) - 2271584..2271841 (-) 258 WP_072579982.1 DUF3243 domain-containing protein -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37493.72 Da        Isoelectric Point: 5.0859

>NTDB_id=185313 A9C19_RS10940 WP_072579977.1 2266496..2267533(-) (recA) [Bacillus weihaiensis strain Alg07]
MSDRQAALDMALKQIEKQFGKGSIMKLGEQTDRKVSTVPSGSLALDTALGIGGYPRGRIIEIYGPESSGKTTVALHAIAE
VQQQGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDILVIDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAETLKQGNDMVGNKT
KIKVVKNKVAPPFKVAEVDIMYGEGISKEGEIVDLGTDLDIVQKSGSWYSYNEERLGQGRENAKQFLKENPAIRLEIQEK
IRKHYGLDEDVTAPEESHELDLLGE

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=185313 A9C19_RS10940 WP_072579977.1 2266496..2267533(-) (recA) [Bacillus weihaiensis strain Alg07]
GTGAGTGATCGTCAAGCTGCCTTAGATATGGCTTTAAAACAAATAGAGAAGCAATTCGGTAAAGGTTCTATTATGAAGTT
AGGAGAGCAAACAGATCGTAAGGTATCAACTGTACCTAGTGGATCGTTAGCTTTGGATACAGCATTAGGAATAGGTGGAT
ATCCACGTGGTAGAATTATAGAAATATATGGACCAGAAAGCTCAGGTAAAACGACTGTAGCTTTACATGCAATTGCAGAG
GTTCAACAGCAAGGTGGTCAAGCAGCATTTATTGATGCTGAGCATGCCTTAGACCCAGTTTATGCACAAAAATTAGGCGT
TAATATTGATGAGTTATTATTATCTCAACCAGATACTGGAGAACAAGCACTTGAAATAGCTGAGGCACTTGTACGCAGTG
GTGCAGTAGATATTTTAGTCATCGATTCAGTTGCAGCATTAGTTCCTAAAGCTGAAATTGAAGGTGAGATGGGTGACTCT
CATGTTGGTCTTCAAGCTCGTTTAATGTCTCAAGCATTACGTAAACTTTCTGGTGCGATTAATAAATCTAAGACCATTGC
TATTTTCATCAATCAAATTCGTGAAAAAGTCGGTGTTATGTTTGGTAACCCAGAAACTACTCCAGGAGGACGTGCTTTAA
AGTTCTATTCTTCTGTTCGTTTAGAAGTTCGTCGTGCTGAAACACTTAAGCAAGGTAATGACATGGTCGGTAATAAAACA
AAAATAAAAGTAGTGAAAAATAAAGTAGCACCTCCGTTTAAAGTTGCAGAAGTCGATATTATGTACGGAGAAGGAATTTC
AAAAGAGGGAGAAATCGTAGACTTAGGTACGGACTTAGATATTGTTCAAAAGAGTGGATCTTGGTATTCATACAATGAAG
AACGTTTAGGTCAAGGTCGTGAAAATGCGAAACAATTCCTTAAAGAAAATCCTGCTATTCGTCTAGAAATTCAAGAGAAG
ATTCGTAAACATTACGGTCTTGATGAGGATGTAACTGCTCCAGAGGAAAGTCACGAATTAGACTTACTAGGTGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1L3MSB6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

92.424

95.652

0.884
  recA Latilactobacillus sakei subsp. sakei 23K

76.347

96.812

0.739
  recA Streptococcus mutans UA159

69.118

98.551

0.681
  recA Streptococcus pneumoniae Rx1

70

95.652

0.67
  recA Streptococcus mitis NCTC 12261

70

95.652

0.67
  recA Streptococcus pneumoniae D39

70

95.652

0.67
  recA Streptococcus pneumoniae R6

70

95.652

0.67
  recA Streptococcus pneumoniae TIGR4

70

95.652

0.67
  recA Streptococcus pyogenes NZ131

70.122

95.072

0.667
  recA Streptococcus mitis SK321

69.697

95.652

0.667
  recA Lactococcus lactis subsp. cremoris KW2

67.868

96.522

0.655
  recA Ralstonia pseudosolanacearum GMI1000

65.749

94.783

0.623
  recA Neisseria gonorrhoeae MS11

64.35

95.942

0.617
  recA Neisseria gonorrhoeae MS11

64.35

95.942

0.617
  recA Neisseria gonorrhoeae strain FA1090

64.35

95.942

0.617
  recA Helicobacter pylori 26695

62.242

98.261

0.612
  recA Helicobacter pylori strain NCTC11637

62.242

98.261

0.612
  recA Acinetobacter baylyi ADP1

61.047

99.71

0.609
  recA Vibrio cholerae strain A1552

65.421

93.043

0.609
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.421

93.043

0.609
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.388

97.101

0.606
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.914

94.783

0.606
  recA Acinetobacter baumannii D1279779

63.975

93.333

0.597
  recA Glaesserella parasuis strain SC1401

60.058

99.42

0.597
  recA Pseudomonas stutzeri DSM 10701

62.813

92.754

0.583
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.5

92.754

0.58

Multiple sequence alignment