Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   BSA171_RS11290 Genome accession   NZ_CP015611
Coordinates   2172901..2173944 (-) Length   347 a.a.
NCBI ID   WP_041084791.1    Uniprot ID   -
Organism   Bacillus safensis strain U17-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2167901..2178944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSA171_RS11270 (BSA171_11090) spoVS 2168437..2168697 (-) 261 WP_003211281.1 stage V sporulation protein SpoVS -
  BSA171_RS11275 (BSA171_11095) - 2168900..2169694 (-) 795 WP_047202212.1 TIGR00282 family metallophosphoesterase -
  BSA171_RS11280 (BSA171_11100) rny 2169785..2171347 (-) 1563 WP_003211958.1 ribonuclease Y -
  BSA171_RS11285 (BSA171_11105) - 2171581..2172756 (-) 1176 WP_073979735.1 serine hydrolase domain-containing protein -
  BSA171_RS11290 (BSA171_11110) recA 2172901..2173944 (-) 1044 WP_041084791.1 recombinase RecA Machinery gene
  BSA171_RS11295 (BSA171_11115) cinA 2174123..2175373 (-) 1251 WP_075611413.1 competence/damage-inducible protein A Machinery gene
  BSA171_RS11300 (BSA171_11120) pgsA 2175390..2175971 (-) 582 WP_008358030.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  BSA171_RS11305 (BSA171_11125) - 2176045..2176944 (-) 900 WP_075611412.1 helix-turn-helix domain-containing protein -
  BSA171_RS11310 (BSA171_11130) - 2176968..2177759 (-) 792 WP_003211480.1 DUF3388 domain-containing protein -
  BSA171_RS11315 (BSA171_11135) - 2177891..2178148 (-) 258 WP_024424114.1 DUF3243 domain-containing protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37862.11 Da        Isoelectric Point: 4.8329

>NTDB_id=181452 BSA171_RS11290 WP_041084791.1 2172901..2173944(-) (recA) [Bacillus safensis strain U17-1]
MSDRQAALDMALKQIEKQFGKGSIMKLGEQTDTRISTVPSGSLALDTALGIGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQQQGGQAAFIDAEHALDPVYAKKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIVVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDIMGNKT
RIKVVKNKVAPPFRIAEVDIMYGEGISKEGEIIDLGSELDIVQKSGAWYSYQEERLGQGRENAKQFLKENKDIMLMIQEQ
IREHYGLDNNGVAQQESEEALEQLELE

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=181452 BSA171_RS11290 WP_041084791.1 2172901..2173944(-) (recA) [Bacillus safensis strain U17-1]
ATGAGTGATCGTCAAGCAGCCTTAGATATGGCTCTTAAACAAATAGAAAAACAGTTTGGTAAAGGCTCTATTATGAAACT
AGGAGAGCAAACAGATACACGTATTTCAACAGTACCTAGTGGTTCGTTAGCACTTGATACTGCGCTTGGAATAGGCGGAT
ATCCCCGAGGCCGTATTATCGAAGTATATGGTCCAGAGAGTTCTGGTAAAACGACAGTAGCCCTTCATGCCATTGCTGAA
GTTCAGCAGCAGGGAGGACAAGCTGCATTTATTGATGCAGAGCATGCACTCGATCCAGTTTACGCTAAAAAACTAGGTGT
CAACATTGATGAACTGTTACTTTCTCAGCCGGATACAGGAGAGCAAGCACTTGAAATTGCAGAAGCTCTTGTCCGCAGCG
GGGCAGTTGATATTGTTGTTATTGACTCTGTAGCTGCTCTTGTACCAAAAGCAGAGATTGAAGGAGACATGGGTGATTCA
CACGTTGGTCTTCAAGCGCGTTTGATGTCTCAAGCTCTTCGTAAGCTATCAGGTGCTATCAACAAATCAAAAACAATTGC
CATCTTTATTAACCAAATTCGTGAAAAAGTTGGGGTCATGTTCGGTAACCCTGAAACAACGCCTGGTGGACGTGCGCTGA
AGTTCTATTCATCTGTTCGTTTAGAAGTGCGCCGTGCTGAACAGCTGAAACAAGGCAATGACATTATGGGGAATAAAACG
AGAATTAAAGTGGTGAAAAACAAAGTGGCACCGCCATTCCGTATTGCGGAAGTAGACATTATGTACGGTGAAGGGATCTC
AAAAGAGGGAGAAATCATCGACCTTGGAAGCGAACTAGATATCGTACAAAAGAGCGGTGCTTGGTATTCTTACCAAGAGG
AACGTCTTGGACAAGGCCGTGAAAATGCGAAACAGTTCCTAAAAGAAAATAAAGATATCATGCTGATGATCCAGGAGCAA
ATTCGCGAACATTACGGTTTGGATAATAACGGAGTAGCGCAGCAGGAATCTGAAGAGGCGCTAGAACAATTAGAATTAGA
ATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

96.988

95.677

0.928
  recA Latilactobacillus sakei subsp. sakei 23K

74.618

94.236

0.703
  recA Streptococcus mitis NCTC 12261

67.442

99.135

0.669
  recA Streptococcus pneumoniae Rx1

67.836

98.559

0.669
  recA Streptococcus pneumoniae D39

67.836

98.559

0.669
  recA Streptococcus pneumoniae R6

67.836

98.559

0.669
  recA Streptococcus pneumoniae TIGR4

67.836

98.559

0.669
  recA Streptococcus mutans UA159

67.055

98.847

0.663
  recA Streptococcus mitis SK321

65.805

100

0.66
  recA Streptococcus pyogenes NZ131

67.988

94.524

0.643
  recA Lactococcus lactis subsp. cremoris KW2

66.172

97.118

0.643
  recA Helicobacter pylori 26695

62.791

99.135

0.622
  recA Helicobacter pylori strain NCTC11637

62.791

99.135

0.622
  recA Neisseria gonorrhoeae strain FA1090

65.138

94.236

0.614
  recA Neisseria gonorrhoeae MS11

65.138

94.236

0.614
  recA Neisseria gonorrhoeae MS11

65.138

94.236

0.614
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.647

97.983

0.614
  recA Acinetobacter baylyi ADP1

60.58

99.424

0.602
  recA Acinetobacter baumannii D1279779

61.834

97.406

0.602
  recA Ralstonia pseudosolanacearum GMI1000

65.615

91.354

0.599
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.486

92.507

0.597
  recA Vibrio cholerae strain A1552

64.486

92.507

0.597
  recA Glaesserella parasuis strain SC1401

60.174

99.135

0.597
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.385

94.236

0.588
  recA Pseudomonas stutzeri DSM 10701

63.125

92.219

0.582
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.312

92.219

0.556

Multiple sequence alignment