Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   BSA171_RS11295 Genome accession   NZ_CP015611
Coordinates   2174123..2175373 (-) Length   416 a.a.
NCBI ID   WP_075611413.1    Uniprot ID   -
Organism   Bacillus safensis strain U17-1     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2169123..2180373
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSA171_RS11280 (BSA171_11100) rny 2169785..2171347 (-) 1563 WP_003211958.1 ribonuclease Y -
  BSA171_RS11285 (BSA171_11105) - 2171581..2172756 (-) 1176 WP_073979735.1 serine hydrolase domain-containing protein -
  BSA171_RS11290 (BSA171_11110) recA 2172901..2173944 (-) 1044 WP_041084791.1 recombinase RecA Machinery gene
  BSA171_RS11295 (BSA171_11115) cinA 2174123..2175373 (-) 1251 WP_075611413.1 competence/damage-inducible protein A Machinery gene
  BSA171_RS11300 (BSA171_11120) pgsA 2175390..2175971 (-) 582 WP_008358030.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  BSA171_RS11305 (BSA171_11125) - 2176045..2176944 (-) 900 WP_075611412.1 helix-turn-helix domain-containing protein -
  BSA171_RS11310 (BSA171_11130) - 2176968..2177759 (-) 792 WP_003211480.1 DUF3388 domain-containing protein -
  BSA171_RS11315 (BSA171_11135) - 2177891..2178148 (-) 258 WP_024424114.1 DUF3243 domain-containing protein -
  BSA171_RS11320 (BSA171_11140) ymfI 2178222..2178950 (-) 729 WP_075611411.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45566.61 Da        Isoelectric Point: 4.7414

>NTDB_id=181453 BSA171_RS11295 WP_075611413.1 2174123..2175373(-) (cinA) [Bacillus safensis strain U17-1]
MKSERKAEIIAVGSELLLGQITNTNAQFISKQLAEIGVNVYYHTAVGDNPERLKQAIQVAQERSNFIIFSGGLGPTKDDL
TKETIASTLGKELVLNEEAFESIQDYFRKTGRDMSPNNRKQALVLEGSDVLVNRFGMAPGMFVQEDNTFYMLLPGPPSEL
HPMFENEAKPLISEKLGLKEKIVSVVLRFFGIGESQLETDLEDLIDAQTNPTIAPLASDGEVTLRLTAKHEDEKETERLL
KETEAQILALVGEYFYGYGDTSLVREASKALHEHGKTVAAAESLTGGMFSEWLTDLEGASSILNGSVVCYTNQVKQQVLG
CREETLSSHGAVSKECALELAEGVRKLTGSDIGISFTGVAGPDTQEGQPVGKVFIGLSTKDQTDVFEWMFTGSRSGIRKR
AVKYGLHHLLNLLKES

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=181453 BSA171_RS11295 WP_075611413.1 2174123..2175373(-) (cinA) [Bacillus safensis strain U17-1]
TTGAAGTCAGAGAGAAAAGCAGAAATTATTGCAGTCGGTTCCGAACTCTTGCTAGGGCAAATTACGAATACGAATGCACA
ATTCATCAGCAAACAACTAGCTGAAATTGGTGTGAATGTTTATTACCACACAGCAGTTGGTGACAATCCAGAGCGTTTAA
AACAGGCCATTCAGGTGGCGCAGGAAAGATCTAATTTTATTATCTTCTCAGGTGGTCTTGGACCAACCAAAGATGACTTA
ACAAAAGAAACAATTGCGAGCACGCTCGGTAAAGAGCTTGTACTAAATGAAGAAGCATTTGAATCGATTCAAGACTACTT
TCGAAAGACCGGCCGCGATATGTCACCGAACAACCGTAAGCAGGCACTCGTTCTAGAAGGATCAGATGTGCTTGTGAACC
GTTTCGGGATGGCTCCAGGTATGTTTGTTCAAGAAGATAATACGTTTTATATGCTTCTTCCTGGACCGCCAAGTGAATTG
CACCCGATGTTTGAAAACGAGGCAAAGCCGCTTATTTCTGAGAAGCTTGGCTTAAAGGAAAAAATTGTGTCTGTTGTTCT
GCGCTTCTTCGGAATCGGTGAATCGCAGCTTGAAACAGACCTAGAAGATTTAATTGATGCTCAAACCAACCCGACGATTG
CACCACTCGCATCTGACGGTGAAGTGACGCTAAGGCTGACTGCTAAGCATGAGGATGAAAAAGAAACAGAGCGTCTGTTA
AAAGAAACAGAAGCACAAATTTTAGCGCTGGTAGGAGAGTACTTCTACGGATATGGGGATACATCACTTGTCCGCGAAGC
GTCCAAAGCCTTGCACGAGCACGGGAAAACAGTAGCAGCAGCAGAAAGCCTGACTGGCGGAATGTTCTCCGAATGGCTGA
CAGATCTCGAAGGAGCATCATCCATTTTGAACGGAAGTGTGGTTTGTTATACAAACCAAGTCAAACAGCAGGTACTTGGC
TGCCGGGAAGAAACACTGTCTTCTCATGGGGCTGTCAGTAAAGAGTGCGCTTTAGAGCTTGCTGAAGGGGTTAGGAAGCT
GACCGGAAGTGATATTGGCATTAGCTTTACGGGTGTAGCAGGACCTGATACCCAAGAGGGTCAGCCTGTTGGAAAAGTAT
TCATTGGACTATCGACGAAAGACCAGACGGACGTGTTTGAATGGATGTTTACAGGCAGCCGGTCGGGCATTCGAAAGCGC
GCTGTGAAATATGGTCTGCATCACTTACTCAACTTATTAAAAGAGAGTTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(186-257)

Competence-damaged protein (CinA)

(262-412)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

75.181

99.76

0.75
  cinA Streptococcus mitis SK321

47.743

100

0.483
  cinA Streptococcus pneumoniae TIGR4

47.743

100

0.483
  cinA Streptococcus mutans UA159

48.077

100

0.481
  cinA Streptococcus mitis NCTC 12261

47.506

100

0.481
  cinA Streptococcus pneumoniae Rx1

47.506

100

0.481
  cinA Streptococcus pneumoniae R6

47.506

100

0.481
  cinA Streptococcus pneumoniae D39

47.268

100

0.478
  cinA Streptococcus suis isolate S10

43.122

90.865

0.392

Multiple sequence alignment