Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   A6M16_RS00385 Genome accession   NZ_CP015557
Coordinates   65725..66876 (+) Length   383 a.a.
NCBI ID   WP_029172053.1    Uniprot ID   -
Organism   Streptococcus suis strain DN13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 60725..71876
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6M16_RS00365 (A6M16_00365) mutL 61161..63098 (+) 1938 WP_063725144.1 DNA mismatch repair endonuclease MutL -
  A6M16_RS00370 (A6M16_00370) ruvA 63137..63727 (+) 591 WP_063725145.1 Holliday junction branch migration protein RuvA -
  A6M16_RS00375 (A6M16_00375) - 63886..64455 (+) 570 WP_014637285.1 DNA-3-methyladenine glycosylase I -
  A6M16_RS00380 (A6M16_00380) cinA 64492..65673 (+) 1182 WP_044685818.1 competence/damage-inducible protein A Machinery gene
  A6M16_RS00385 (A6M16_00385) recA 65725..66876 (+) 1152 WP_029172053.1 recombinase RecA Machinery gene
  A6M16_RS00390 (A6M16_00390) spx 67112..67510 (+) 399 WP_002939362.1 transcriptional regulator Spx -
  A6M16_RS00395 (A6M16_00395) - 67610..67876 (+) 267 WP_002939360.1 IreB family regulatory phosphoprotein -
  A6M16_RS00400 (A6M16_00400) ruvX 67876..68295 (+) 420 WP_002939356.1 Holliday junction resolvase RuvX -
  A6M16_RS00405 (A6M16_00405) - 68307..68627 (+) 321 WP_002939343.1 DUF1292 domain-containing protein -
  A6M16_RS11320 - 68786..68908 (+) 123 WP_257571720.1 hypothetical protein -
  A6M16_RS00410 (A6M16_00410) rpsJ 69117..69425 (+) 309 WP_014735259.1 30S ribosomal protein S10 -
  A6M16_RS00415 (A6M16_00415) rplC 69562..70188 (+) 627 WP_011921686.1 50S ribosomal protein L3 -
  A6M16_RS00420 (A6M16_00420) rplD 70213..70836 (+) 624 WP_004195490.1 50S ribosomal protein L4 -
  A6M16_RS00425 (A6M16_00425) - 70836..71135 (+) 300 WP_004195491.1 50S ribosomal protein L23 -

Sequence

Protein


Download         Length: 383 a.a.        Molecular weight: 40949.65 Da        Isoelectric Point: 4.8910

>NTDB_id=180657 A6M16_RS00385 WP_029172053.1 65725..66876(+) (recA) [Streptococcus suis strain DN13]
MAKKPGKKLEDITKKFGDERKKALDDALKSIEKDFGKGAVMRLGERAEQKVQVMSSGSLSIDIALGAGGYPKGRIIEIYG
PESSGKTTVALHAVAQAQKDGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSV
AALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASINKTKTVAIFINQLREKVGVMFGNPETTPGGRALKFYASVRMDVR
GNTQIKGTGDKKDQNVGKETKVKIVKNKVAPPFKEAVVEIMYGEGISRTGELIEIGSNLGIIQKAGAWYSYNGEKIGQGS
ENAKKFLADNPAIFDEIDRKIRVHYGLIEADETQETVTEEAPVAIEEVQDVVLDLDGGIELED

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=180657 A6M16_RS00385 WP_029172053.1 65725..66876(+) (recA) [Streptococcus suis strain DN13]
TTGGCTAAGAAACCAGGAAAAAAATTAGAAGATATTACAAAGAAATTTGGCGATGAGCGTAAAAAAGCGTTGGATGATGC
CCTAAAATCAATTGAAAAAGATTTTGGTAAGGGCGCTGTCATGCGTCTTGGTGAGCGTGCTGAGCAAAAAGTTCAAGTCA
TGAGCTCAGGTAGTTTGTCAATCGACATTGCGCTTGGAGCGGGTGGCTATCCGAAAGGTCGTATCATTGAGATTTATGGT
CCAGAGAGCTCAGGTAAGACAACTGTTGCCCTTCATGCAGTAGCTCAAGCCCAGAAAGATGGCGGTATTGCTGCCTTTAT
CGATGCGGAACACGCCTTGGATCCAGCCTATGCAGCAGCTCTTGGTGTCAATATTGATGAGTTACTATTGTCACAGCCAG
ACTCAGGGGAACAAGGTCTTGAAATTGCAGGCAAGCTAATCGACTCTGGTGCGGTTGACTTGGTTGTTGTTGACTCGGTC
GCTGCCCTTGTACCTCGTGCAGAGATTGACGGTGATATCGGTGATAGCCACGTTGGTTTGCAGGCTCGTATGATGAGCCA
GGCTATGCGCAAACTAGGTGCATCCATCAACAAAACTAAGACGGTAGCCATTTTCATTAACCAGTTGCGTGAAAAAGTCG
GTGTCATGTTTGGTAACCCTGAAACAACACCTGGTGGACGTGCGCTTAAATTCTATGCATCTGTCCGTATGGATGTTCGT
GGAAACACACAAATCAAAGGGACAGGTGATAAGAAAGATCAAAACGTTGGTAAGGAAACCAAGGTGAAGATTGTGAAGAA
CAAGGTGGCTCCACCATTTAAAGAAGCTGTTGTTGAAATCATGTACGGTGAAGGAATTTCTCGCACAGGTGAATTGATTG
AGATTGGTAGCAACCTCGGCATCATCCAAAAAGCAGGTGCTTGGTATTCATATAATGGAGAAAAAATTGGCCAAGGTTCT
GAAAATGCTAAGAAATTCTTGGCAGATAATCCAGCAATCTTTGATGAAATTGACCGCAAAATCCGTGTTCATTACGGTTT
GATTGAAGCTGATGAAACGCAAGAAACTGTGACAGAAGAGGCTCCTGTTGCTATCGAAGAGGTTCAAGATGTTGTTTTGG
ACTTGGATGGCGGTATTGAATTAGAAGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(22-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mutans UA159

86.198

100

0.864
  recA Streptococcus pyogenes NZ131

85.379

100

0.854
  recA Streptococcus pneumoniae R6

83.42

100

0.841
  recA Streptococcus pneumoniae Rx1

83.42

100

0.841
  recA Streptococcus pneumoniae D39

83.42

100

0.841
  recA Streptococcus pneumoniae TIGR4

83.42

100

0.841
  recA Streptococcus mitis NCTC 12261

83.77

99.739

0.836
  recA Streptococcus mitis SK321

82.984

99.739

0.828
  recA Lactococcus lactis subsp. cremoris KW2

74.788

92.167

0.689
  recA Latilactobacillus sakei subsp. sakei 23K

64.943

90.862

0.59
  recA Bacillus subtilis subsp. subtilis str. 168

68.085

85.901

0.585
  recA Acinetobacter baylyi ADP1

59.143

91.384

0.54
  recA Neisseria gonorrhoeae MS11

62.236

86.423

0.538
  recA Neisseria gonorrhoeae MS11

62.236

86.423

0.538
  recA Neisseria gonorrhoeae strain FA1090

62.236

86.423

0.538
  recA Acinetobacter baumannii D1279779

62.577

85.117

0.533
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.094

85.901

0.525
  recA Vibrio cholerae strain A1552

61.538

84.856

0.522
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.538

84.856

0.522
  recA Pseudomonas stutzeri DSM 10701

57.726

89.556

0.517
  recA Glaesserella parasuis strain SC1401

60.923

84.856

0.517
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.681

84.334

0.512
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.61

86.423

0.507
  recA Ralstonia pseudosolanacearum GMI1000

60.568

82.768

0.501
  recA Helicobacter pylori 26695

57.879

86.162

0.499
  recA Helicobacter pylori strain NCTC11637

57.879

86.162

0.499

Multiple sequence alignment