Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | A4H00_RS03485 | Genome accession | NZ_CP015196 |
| Coordinates | 682977..684155 (-) | Length | 392 a.a. |
| NCBI ID | WP_067087334.1 | Uniprot ID | - |
| Organism | Streptococcus marmotae strain HTS5 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 630972..684155 | 682977..684155 | within | 0 |
Gene organization within MGE regions
Location: 630972..684155
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A4H00_RS03205 | - | 630972..631925 (+) | 954 | WP_067086998.1 | IS30 family transposase | - |
| A4H00_RS03210 | - | 631940..632239 (-) | 300 | WP_157770977.1 | hypothetical protein | - |
| A4H00_RS03215 | - | 632525..633385 (-) | 861 | WP_067087217.1 | helix-turn-helix domain-containing protein | - |
| A4H00_RS03220 | leuS | 633481..635982 (-) | 2502 | WP_067087220.1 | leucine--tRNA ligase | - |
| A4H00_RS03225 | - | 636228..636572 (+) | 345 | WP_067087222.1 | hypothetical protein | - |
| A4H00_RS03230 | - | 636648..638540 (-) | 1893 | WP_067087225.1 | M13-type metalloendopeptidase | - |
| A4H00_RS03235 | - | 638751..639476 (+) | 726 | WP_067091429.1 | metal ABC transporter ATP-binding protein | - |
| A4H00_RS03240 | - | 639473..640324 (+) | 852 | WP_067087228.1 | metal ABC transporter permease | - |
| A4H00_RS03245 | - | 640335..641264 (+) | 930 | WP_067087231.1 | metal ABC transporter substrate-binding protein | - |
| A4H00_RS03250 | - | 641633..642280 (+) | 648 | WP_067087233.1 | metal-dependent transcriptional regulator | - |
| A4H00_RS03255 | - | 642335..642723 (+) | 389 | Protein_632 | transposase | - |
| A4H00_RS03260 | - | 642887..644110 (-) | 1224 | WP_067087237.1 | MFS transporter | - |
| A4H00_RS03265 | - | 644079..646055 (-) | 1977 | WP_067087239.1 | kinase | - |
| A4H00_RS11810 | - | 646058..646225 (-) | 168 | WP_157770978.1 | hypothetical protein | - |
| A4H00_RS03270 | - | 646558..647424 (-) | 867 | WP_067087241.1 | Rgg/GadR/MutR family transcriptional regulator | - |
| A4H00_RS03275 | dtd | 647940..648383 (-) | 444 | WP_067087242.1 | D-aminoacyl-tRNA deacylase | - |
| A4H00_RS03280 | - | 648392..650593 (-) | 2202 | WP_067087244.1 | RelA/SpoT family protein | - |
| A4H00_RS03290 | - | 651405..652736 (+) | 1332 | WP_067087248.1 | ATP-binding cassette domain-containing protein | - |
| A4H00_RS03295 | - | 652720..653709 (+) | 990 | WP_067087250.1 | ArsR/SmtB family transcription factor | - |
| A4H00_RS03300 | - | 654010..654546 (+) | 537 | WP_067087251.1 | STM3941 family protein | - |
| A4H00_RS12075 | - | 654569..655312 (-) | 744 | WP_067087254.1 | 16S rRNA (uracil(1498)-N(3))-methyltransferase | - |
| A4H00_RS12080 | prmA | 655313..656257 (-) | 945 | WP_067087256.1 | 50S ribosomal protein L11 methyltransferase | - |
| A4H00_RS03315 | - | 656268..657176 (-) | 909 | WP_067087259.1 | GIY-YIG nuclease family protein | - |
| A4H00_RS03320 | - | 657179..657649 (-) | 471 | WP_067087262.1 | DUF3013 family protein | - |
| A4H00_RS03325 | - | 657735..659020 (+) | 1286 | Protein_646 | replication-associated recombination protein A | - |
| A4H00_RS03340 | - | 659918..661462 (+) | 1545 | WP_067087265.1 | quinol oxidase | - |
| A4H00_RS03345 | nrdD | 661613..663823 (+) | 2211 | WP_067087268.1 | anaerobic ribonucleoside-triphosphate reductase | - |
| A4H00_RS12005 | - | 663801..663938 (+) | 138 | WP_099092152.1 | hypothetical protein | - |
| A4H00_RS03350 | - | 664090..664593 (+) | 504 | WP_067087269.1 | GNAT family N-acetyltransferase | - |
| A4H00_RS03355 | - | 664597..665106 (+) | 510 | WP_067087272.1 | GNAT family N-acetyltransferase | - |
| A4H00_RS03360 | nrdG | 665103..665699 (+) | 597 | WP_067087275.1 | anaerobic ribonucleoside-triphosphate reductase activating protein | - |
| A4H00_RS03365 | glf | 665761..666866 (+) | 1106 | Protein_653 | UDP-galactopyranose mutase | - |
| A4H00_RS03375 | - | 667284..667625 (-) | 342 | WP_067087279.1 | DUF1033 family protein | - |
| A4H00_RS03380 | groL | 667961..669583 (-) | 1623 | WP_067087281.1 | chaperonin GroEL | - |
| A4H00_RS03385 | groES | 669597..669881 (-) | 285 | WP_067087286.1 | co-chaperone GroES | - |
| A4H00_RS03390 | ssbB/cilA | 670604..670999 (-) | 396 | WP_067087289.1 | single-stranded DNA-binding protein | Machinery gene |
| A4H00_RS03395 | ytpR | 671065..671691 (-) | 627 | WP_067087291.1 | YtpR family tRNA-binding protein | - |
| A4H00_RS03400 | - | 671695..672015 (-) | 321 | WP_067087294.1 | thioredoxin family protein | - |
| A4H00_RS03405 | - | 672012..672296 (-) | 285 | WP_067091432.1 | DUF4651 domain-containing protein | - |
| A4H00_RS03410 | pepA | 672348..673421 (+) | 1074 | WP_067087297.1 | glutamyl aminopeptidase | - |
| A4H00_RS03415 | - | 673461..674024 (-) | 564 | WP_067087300.1 | folate family ECF transporter S component | - |
| A4H00_RS03420 | - | 674641..675831 (-) | 1191 | WP_067087302.1 | acetate kinase | - |
| A4H00_RS03425 | comYH | 675880..676833 (-) | 954 | WP_067087305.1 | class I SAM-dependent methyltransferase | Machinery gene |
| A4H00_RS03430 | comGG | 676856..677365 (-) | 510 | WP_067087307.1 | competence type IV pilus minor pilin ComGG | - |
| A4H00_RS03435 | comYF | 677337..677774 (-) | 438 | WP_067087309.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| A4H00_RS03440 | comGE | 677758..677997 (-) | 240 | WP_237334209.1 | competence type IV pilus minor pilin ComGE | - |
| A4H00_RS03445 | comGD/cglD | 678023..678460 (-) | 438 | WP_067087315.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| A4H00_RS03450 | comGC/cglC | 678411..678725 (-) | 315 | WP_067087318.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| A4H00_RS03455 | comYB | 678727..679755 (-) | 1029 | WP_167541367.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| A4H00_RS03460 | comGA/cglA/cilD | 679676..680626 (-) | 951 | WP_067087321.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| A4H00_RS03465 | - | 681214..681525 (-) | 312 | WP_067087324.1 | DUF1292 domain-containing protein | - |
| A4H00_RS03470 | ruvX | 681536..681955 (-) | 420 | WP_067087326.1 | Holliday junction resolvase RuvX | - |
| A4H00_RS03475 | - | 681955..682221 (-) | 267 | WP_067087329.1 | IreB family regulatory phosphoprotein | - |
| A4H00_RS03480 | spx | 682378..682776 (-) | 399 | WP_067087332.1 | transcriptional regulator Spx | - |
| A4H00_RS03485 | recA | 682977..684155 (-) | 1179 | WP_067087334.1 | recombinase RecA | Machinery gene |
Sequence
Protein
Download Length: 392 a.a. Molecular weight: 42262.92 Da Isoelectric Point: 4.8752
>NTDB_id=177429 A4H00_RS03485 WP_067087334.1 682977..684155(-) (recA) [Streptococcus marmotae strain HTS5]
MAKKPSKKLEDITKKYGDERKKALDDALKIIEKDFGKGAIMRLGERAEQKVQVMSSGSLSIDIALGAGGYPKGRIIEIYG
PESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAQALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSV
AALVPRAEIDGEIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVSFGNPETTPGGRALKFYASVRMDVR
GNTQIKGSGDQKDTNVGKETKVKIVKNKVAPPFKEVVVEIMYGHGISQTGELVEIGSNLGIIKKAGAWYSYNDEKIGQGS
ENAKKYLEEHPEIFAEIDRKIRVHYGLIEDSEQTEVVETADKEEKAEESKDAVAAENQEVVLDLDGGIELED
MAKKPSKKLEDITKKYGDERKKALDDALKIIEKDFGKGAIMRLGERAEQKVQVMSSGSLSIDIALGAGGYPKGRIIEIYG
PESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAQALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSV
AALVPRAEIDGEIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVSFGNPETTPGGRALKFYASVRMDVR
GNTQIKGSGDQKDTNVGKETKVKIVKNKVAPPFKEVVVEIMYGHGISQTGELVEIGSNLGIIKKAGAWYSYNDEKIGQGS
ENAKKYLEEHPEIFAEIDRKIRVHYGLIEDSEQTEVVETADKEEKAEESKDAVAAENQEVVLDLDGGIELED
Nucleotide
Download Length: 1179 bp
>NTDB_id=177429 A4H00_RS03485 WP_067087334.1 682977..684155(-) (recA) [Streptococcus marmotae strain HTS5]
TTGGCGAAAAAACCAAGTAAAAAATTAGAAGATATTACCAAAAAATATGGTGATGAACGGAAAAAAGCCTTAGATGATGC
CCTTAAAATCATTGAGAAAGACTTTGGTAAGGGAGCGATTATGCGCCTCGGAGAACGGGCAGAACAAAAAGTCCAAGTCA
TGAGTTCAGGAAGCTTGTCTATTGATATTGCCTTAGGTGCTGGTGGTTATCCGAAAGGACGGATTATCGAAATCTACGGT
CCTGAAAGTTCAGGTAAGACGACGGTTGCTCTTCATGCAGTTGCTCAGGCGCAAAAAGAGGGTGGTATTGCAGCCTTTAT
CGATGCTGAGCATGCACTTGATCCGGCTTATGCCCAAGCGCTAGGTGTTAACATTGATGAGTTGCTTTTATCACAACCGG
ACTCTGGTGAGCAGGGACTTGAAATTGCAGGAAAGTTGATTGATTCAGGCGCAGTTGACCTAGTGGTAGTCGATTCGGTT
GCTGCCCTTGTTCCTCGCGCTGAGATTGATGGTGAGATCGGGGATAGCCACGTTGGTTTGCAAGCTCGGATGATGAGTCA
GGCGATGCGGAAACTATCTGCTTCAATCAATAAAACCAAGACGATAGCCATTTTCATCAACCAATTGCGTGAAAAGGTTG
GTGTGTCGTTTGGAAATCCTGAGACAACGCCTGGTGGACGTGCGCTGAAATTCTACGCGTCTGTCCGTATGGATGTTCGT
GGAAATACCCAGATTAAGGGTAGTGGTGACCAAAAAGATACCAATGTCGGAAAAGAAACCAAGGTCAAAATCGTCAAAAA
TAAGGTAGCTCCACCATTTAAGGAAGTAGTTGTTGAAATCATGTATGGTCACGGTATTTCACAGACTGGTGAATTAGTTG
AAATCGGAAGTAATCTTGGTATTATCAAAAAAGCAGGTGCTTGGTATTCTTACAACGATGAGAAAATCGGTCAAGGTTCA
GAAAATGCCAAGAAATATTTGGAGGAACATCCAGAAATCTTTGCAGAAATCGACCGAAAAATTCGTGTCCACTATGGTTT
GATTGAAGATTCAGAACAAACGGAAGTGGTAGAAACGGCAGACAAAGAAGAAAAAGCTGAAGAGAGCAAAGACGCTGTCG
CAGCAGAAAATCAAGAGGTAGTCCTTGATTTAGATGGCGGCATTGAGTTAGAAGATTAA
TTGGCGAAAAAACCAAGTAAAAAATTAGAAGATATTACCAAAAAATATGGTGATGAACGGAAAAAAGCCTTAGATGATGC
CCTTAAAATCATTGAGAAAGACTTTGGTAAGGGAGCGATTATGCGCCTCGGAGAACGGGCAGAACAAAAAGTCCAAGTCA
TGAGTTCAGGAAGCTTGTCTATTGATATTGCCTTAGGTGCTGGTGGTTATCCGAAAGGACGGATTATCGAAATCTACGGT
CCTGAAAGTTCAGGTAAGACGACGGTTGCTCTTCATGCAGTTGCTCAGGCGCAAAAAGAGGGTGGTATTGCAGCCTTTAT
CGATGCTGAGCATGCACTTGATCCGGCTTATGCCCAAGCGCTAGGTGTTAACATTGATGAGTTGCTTTTATCACAACCGG
ACTCTGGTGAGCAGGGACTTGAAATTGCAGGAAAGTTGATTGATTCAGGCGCAGTTGACCTAGTGGTAGTCGATTCGGTT
GCTGCCCTTGTTCCTCGCGCTGAGATTGATGGTGAGATCGGGGATAGCCACGTTGGTTTGCAAGCTCGGATGATGAGTCA
GGCGATGCGGAAACTATCTGCTTCAATCAATAAAACCAAGACGATAGCCATTTTCATCAACCAATTGCGTGAAAAGGTTG
GTGTGTCGTTTGGAAATCCTGAGACAACGCCTGGTGGACGTGCGCTGAAATTCTACGCGTCTGTCCGTATGGATGTTCGT
GGAAATACCCAGATTAAGGGTAGTGGTGACCAAAAAGATACCAATGTCGGAAAAGAAACCAAGGTCAAAATCGTCAAAAA
TAAGGTAGCTCCACCATTTAAGGAAGTAGTTGTTGAAATCATGTATGGTCACGGTATTTCACAGACTGGTGAATTAGTTG
AAATCGGAAGTAATCTTGGTATTATCAAAAAAGCAGGTGCTTGGTATTCTTACAACGATGAGAAAATCGGTCAAGGTTCA
GAAAATGCCAAGAAATATTTGGAGGAACATCCAGAAATCTTTGCAGAAATCGACCGAAAAATTCGTGTCCACTATGGTTT
GATTGAAGATTCAGAACAAACGGAAGTGGTAGAAACGGCAGACAAAGAAGAAAAAGCTGAAGAGAGCAAAGACGCTGTCG
CAGCAGAAAATCAAGAGGTAGTCCTTGATTTAGATGGCGGCATTGAGTTAGAAGATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.