Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   A2G56_RS07750 Genome accession   NZ_CP014835
Coordinates   1678841..1679983 (+) Length   380 a.a.
NCBI ID   WP_062711102.1    Uniprot ID   -
Organism   Streptococcus halotolerans strain HTS9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1673841..1684983
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A2G56_RS07735 - 1674424..1674975 (+) 552 WP_062711093.1 DNA-3-methyladenine glycosylase I -
  A2G56_RS07740 - 1675169..1677091 (-) 1923 WP_062711096.1 ATP-binding cassette domain-containing protein -
  A2G56_RS11200 - 1677257..1677350 (-) 94 Protein_1514 IS3 family transposase -
  A2G56_RS07745 cinA 1677436..1678692 (+) 1257 WP_062711099.1 competence/damage-inducible protein A Machinery gene
  A2G56_RS07750 recA 1678841..1679983 (+) 1143 WP_062711102.1 recombinase RecA Machinery gene
  A2G56_RS07755 spx 1680313..1680711 (+) 399 WP_026217660.1 transcriptional regulator Spx -
  A2G56_RS07760 - 1680775..1681905 (-) 1131 WP_062711105.1 N-acetyldiaminopimelate deacetylase -
  A2G56_RS07765 dapD 1681959..1682657 (-) 699 WP_062711109.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  A2G56_RS07770 - 1682912..1683595 (-) 684 WP_062711112.1 fructose-6-phosphate aldolase -
  A2G56_RS07775 - 1683606..1683971 (-) 366 WP_062711115.1 PTS glucitol/sorbitol transporter subunit IIA -

Sequence

Protein


Download         Length: 380 a.a.        Molecular weight: 40888.47 Da        Isoelectric Point: 4.8196

>NTDB_id=174495 A2G56_RS07750 WP_062711102.1 1678841..1679983(+) (recA) [Streptococcus halotolerans strain HTS9]
MAKKQKKLDTISKKFGDERQKALDDALKNIEKDFGKGAIMKLGERAEQKVQVMSSGSLALDIALGAGGYPKGRIIEIYGP
ESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAQALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYSSVRLDVRG
NTQIKGTGDKKDQNVGKETKIKVVKNKVAPPFKEAFVDIMYGEGISRTGELVKIASDLDIIQKAGAWFSYNGEKIGQGSE
NAKKFLAENPAIFDDIDQKVRVHYGMIEGDQAEAVQEQDETPVEADELVLDLDSSIEIEE

Nucleotide


Download         Length: 1143 bp        

>NTDB_id=174495 A2G56_RS07750 WP_062711102.1 1678841..1679983(+) (recA) [Streptococcus halotolerans strain HTS9]
TTGGCTAAAAAACAAAAAAAACTAGATACCATTTCTAAAAAGTTTGGGGACGAGCGTCAAAAGGCACTTGATGATGCTCT
AAAGAATATCGAAAAGGATTTCGGTAAGGGAGCTATCATGAAGCTGGGTGAACGTGCTGAACAAAAAGTTCAGGTCATGA
GCTCAGGGTCATTGGCACTCGATATTGCTCTTGGTGCTGGTGGTTACCCTAAAGGGCGTATCATTGAAATCTATGGACCG
GAGAGTTCCGGTAAAACAACTGTAGCGCTTCATGCCGTTGCTCAAGCTCAGAAAGAAGGTGGGATTGCTGCCTTCATCGA
TGCCGAGCATGCCTTGGATCCAGCTTACGCTCAGGCGCTTGGTGTTAATATTGATGAACTGCTCTTGTCACAACCAGATT
CAGGGGAGCAAGGTCTTGAAATCGCTGGTAAGTTGATCGACTCAGGTGCGGTTGACTTGGTGGTTGTGGACTCGGTTGCT
GCTCTAGTGCCCCGTGCGGAAATTGATGGTGATATCGGTGATAGCCACGTTGGTTTGCAGGCGCGTATGATGAGTCAGGC
CATGCGTAAATTATCAGCCTCTATCAACAAGACTAAAACAATCGCTATTTTCATCAACCAATTGCGCGAAAAAGTTGGGG
TAATGTTTGGTAATCCTGAAACAACACCTGGCGGACGTGCTCTTAAATTCTACTCATCTGTTCGTTTGGATGTTCGTGGT
AACACCCAAATTAAAGGAACTGGTGATAAGAAAGATCAAAATGTCGGTAAAGAAACTAAAATCAAGGTTGTTAAAAATAA
GGTTGCGCCACCGTTTAAAGAAGCTTTTGTAGACATTATGTACGGTGAAGGGATTTCTCGGACGGGCGAGTTGGTTAAGA
TTGCTAGTGATTTGGATATTATCCAAAAAGCCGGCGCATGGTTCTCTTATAACGGTGAAAAGATTGGTCAGGGGTCTGAA
AATGCTAAGAAGTTCCTGGCGGAGAATCCAGCCATTTTTGATGACATCGATCAAAAAGTACGTGTTCACTATGGTATGAT
CGAAGGTGACCAAGCTGAAGCTGTTCAAGAACAAGATGAAACACCGGTTGAAGCAGACGAGTTGGTTCTCGATCTTGATA
GTAGCATTGAGATTGAAGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mutans UA159

87.99

100

0.887
  recA Streptococcus pyogenes NZ131

86.423

100

0.871
  recA Streptococcus mitis NCTC 12261

85.302

100

0.855
  recA Streptococcus pneumoniae D39

84.156

100

0.853
  recA Streptococcus pneumoniae Rx1

84.156

100

0.853
  recA Streptococcus pneumoniae R6

84.156

100

0.853
  recA Streptococcus pneumoniae TIGR4

84.156

100

0.853
  recA Streptococcus mitis SK321

85.039

100

0.853
  recA Lactococcus lactis subsp. cremoris KW2

76.945

91.316

0.703
  recA Latilactobacillus sakei subsp. sakei 23K

66.482

95

0.632
  recA Bacillus subtilis subsp. subtilis str. 168

71.125

86.579

0.616
  recA Neisseria gonorrhoeae strain FA1090

61.605

91.842

0.566
  recA Neisseria gonorrhoeae MS11

61.605

91.842

0.566
  recA Neisseria gonorrhoeae MS11

61.605

91.842

0.566
  recA Glaesserella parasuis strain SC1401

61.765

89.474

0.553
  recA Acinetobacter baumannii D1279779

58.592

93.421

0.547
  recA Acinetobacter baylyi ADP1

59.249

91.053

0.539
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.848

85

0.534
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.154

85.526

0.532
  recA Vibrio cholerae strain A1552

62.154

85.526

0.532
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.398

86.579

0.532
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.982

87.895

0.518
  recA Ralstonia pseudosolanacearum GMI1000

61.199

83.421

0.511
  recA Helicobacter pylori 26695

57.879

86.842

0.503
  recA Helicobacter pylori strain NCTC11637

57.879

86.842

0.503
  recA Pseudomonas stutzeri DSM 10701

58.154

85.526

0.497

Multiple sequence alignment