Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   A2G56_RS07745 Genome accession   NZ_CP014835
Coordinates   1677436..1678692 (+) Length   418 a.a.
NCBI ID   WP_062711099.1    Uniprot ID   -
Organism   Streptococcus halotolerans strain HTS9     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1672436..1683692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A2G56_RS07730 ruvA 1673549..1674142 (+) 594 WP_062711090.1 Holliday junction branch migration protein RuvA -
  A2G56_RS07735 - 1674424..1674975 (+) 552 WP_062711093.1 DNA-3-methyladenine glycosylase I -
  A2G56_RS07740 - 1675169..1677091 (-) 1923 WP_062711096.1 ATP-binding cassette domain-containing protein -
  A2G56_RS11200 - 1677257..1677350 (-) 94 Protein_1514 IS3 family transposase -
  A2G56_RS07745 cinA 1677436..1678692 (+) 1257 WP_062711099.1 competence/damage-inducible protein A Machinery gene
  A2G56_RS07750 recA 1678841..1679983 (+) 1143 WP_062711102.1 recombinase RecA Machinery gene
  A2G56_RS07755 spx 1680313..1680711 (+) 399 WP_026217660.1 transcriptional regulator Spx -
  A2G56_RS07760 - 1680775..1681905 (-) 1131 WP_062711105.1 N-acetyldiaminopimelate deacetylase -
  A2G56_RS07765 dapD 1681959..1682657 (-) 699 WP_062711109.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  A2G56_RS07770 - 1682912..1683595 (-) 684 WP_062711112.1 fructose-6-phosphate aldolase -

Sequence

Protein


Download         Length: 418 a.a.        Molecular weight: 44916.36 Da        Isoelectric Point: 4.9474

>NTDB_id=174494 A2G56_RS07745 WP_062711099.1 1677436..1678692(+) (cinA) [Streptococcus halotolerans strain HTS9]
MKAELIAVGTEILTGQIVNTNAQYLSEKMAEIGIDVYYQTAVGDNEERLLSVIDLASQRSDLVILCGGLGPTEDDLTKQT
LAKYLKRDLVFDESANHKLDQFFKSRPKYSRTPNNERQAQMVEGSTPIQNITGLAVGGVLTVDGVTYVVLPGPPSELKPM
VQDGLMPLFSTSGEQLYSRVLRFFGIGESQLVTVLADMIDQQTDPTLAPYAKVGEVTLRLSTKAKDQKSADTKLDALEAQ
LLAMQGLDDLPLKSHLYGYGEGNSLAQVTVELLKDSGKTITAAESLTAGLFQSTIADFQGVSSIFKGGFVTYSLEQKAAM
LGISRDDLLKHGVVSEFTAKAMAHSAREKVGADLSISLTGVAGPDELEGQPVGTVFIGLASEAGVCVKKVHIGGRSRSDI
RYIAVLHALNMIRQALLT

Nucleotide


Download         Length: 1257 bp        

>NTDB_id=174494 A2G56_RS07745 WP_062711099.1 1677436..1678692(+) (cinA) [Streptococcus halotolerans strain HTS9]
ATGAAAGCAGAATTAATTGCAGTCGGAACAGAAATCTTAACTGGGCAAATTGTTAACACCAACGCGCAATACTTGTCGGA
AAAAATGGCCGAAATCGGGATTGATGTTTACTATCAAACAGCCGTAGGAGATAATGAAGAGAGGCTTCTATCGGTCATTG
ATTTGGCAAGTCAACGTAGTGATTTGGTGATTTTATGTGGTGGCTTAGGCCCAACAGAGGATGATTTAACGAAACAAACC
TTGGCGAAGTATTTGAAGAGGGACTTGGTCTTTGACGAGTCAGCCAATCATAAATTAGATCAATTTTTTAAATCTCGACC
TAAATATAGCCGCACTCCTAATAACGAGCGTCAGGCTCAAATGGTTGAAGGGTCAACTCCCATTCAAAACATTACAGGAC
TTGCCGTTGGTGGTGTGTTGACTGTTGATGGTGTCACTTATGTCGTCTTGCCTGGTCCTCCAAGTGAGCTGAAACCGATG
GTACAGGATGGTTTAATGCCCCTCTTTTCAACTAGCGGTGAGCAGCTTTATTCTCGTGTACTTCGTTTCTTTGGCATCGG
TGAGAGCCAGTTGGTGACGGTGTTAGCAGATATGATTGACCAGCAAACTGATCCTACTCTTGCTCCCTATGCTAAAGTTG
GTGAAGTAACCTTGCGACTATCAACCAAGGCTAAAGACCAGAAGTCCGCAGATACTAAGTTGGATGCACTAGAGGCACAA
CTCTTAGCGATGCAAGGTTTGGATGATTTACCATTGAAAAGTCATTTATATGGCTATGGCGAGGGCAATTCTTTAGCTCA
AGTGACGGTTGAGTTGTTGAAGGATTCTGGAAAAACCATTACGGCAGCAGAAAGCTTGACGGCAGGGCTCTTTCAATCGA
CGATTGCTGATTTTCAAGGGGTGTCTTCGATTTTCAAGGGTGGTTTTGTGACCTATAGTTTGGAACAAAAGGCAGCAATG
TTGGGGATTTCTCGAGACGATTTATTAAAGCATGGTGTTGTCAGTGAGTTTACGGCAAAAGCTATGGCTCATTCAGCGCG
TGAAAAAGTTGGGGCTGATTTGTCTATTTCTCTAACTGGAGTAGCGGGTCCTGATGAGCTTGAAGGGCAACCAGTCGGCA
CGGTCTTTATCGGACTAGCTAGCGAAGCAGGTGTTTGTGTCAAAAAAGTTCATATTGGCGGTCGTAGTCGTTCAGATATT
CGATATATTGCGGTCTTACACGCTCTAAATATGATTCGACAAGCATTGCTAACATGA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(178-241)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-167)

Competence-damaged protein (CinA)

(264-416)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

71.77

100

0.718
  cinA Streptococcus pneumoniae TIGR4

71.053

100

0.711
  cinA Streptococcus pneumoniae Rx1

70.574

100

0.706
  cinA Streptococcus mitis NCTC 12261

70.574

100

0.706
  cinA Streptococcus pneumoniae R6

70.574

100

0.706
  cinA Streptococcus pneumoniae D39

70.335

100

0.703
  cinA Streptococcus mutans UA159

69.617

100

0.696
  cinA Streptococcus suis isolate S10

54.808

99.522

0.545
  cinA Bacillus subtilis subsp. subtilis str. 168

44.737

100

0.447

Multiple sequence alignment