Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ATY39_RS03325 Genome accession   NZ_CP014806
Coordinates   711705..712748 (+) Length   347 a.a.
NCBI ID   WP_066785806.1    Uniprot ID   A0A143HAP3
Organism   Rummeliibacillus stabekisii strain PP9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 706705..717748
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ATY39_RS03305 (ATY39_03305) - 707770..708570 (+) 801 WP_066791839.1 DUF3388 domain-containing protein -
  ATY39_RS03310 (ATY39_03310) - 708588..709508 (+) 921 WP_066785794.1 helix-turn-helix domain-containing protein -
  ATY39_RS03315 (ATY39_03315) pgsA 709555..710133 (+) 579 WP_066785797.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ATY39_RS03320 (ATY39_03320) cinA 710280..711533 (+) 1254 WP_066785800.1 competence/damage-inducible protein A Machinery gene
  ATY39_RS03325 (ATY39_03325) recA 711705..712748 (+) 1044 WP_066785806.1 recombinase RecA Machinery gene
  ATY39_RS03330 (ATY39_03330) rny 712994..714550 (+) 1557 WP_066785809.1 ribonuclease Y -
  ATY39_RS03335 (ATY39_03335) - 714697..715494 (+) 798 WP_066785812.1 TIGR00282 family metallophosphoesterase -
  ATY39_RS03340 (ATY39_03340) - 715612..715878 (+) 267 WP_066785813.1 stage V sporulation protein S -
  ATY39_RS18275 (ATY39_03345) - 716149..716373 (+) 225 WP_066785817.1 SdpI family protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37714.80 Da        Isoelectric Point: 4.7023

>NTDB_id=174388 ATY39_RS03325 WP_066785806.1 711705..712748(+) (recA) [Rummeliibacillus stabekisii strain PP9]
MDERKAALDMALKQIEKQFGKGSVMKLGEQADRKVSTSSTGSLALDTALGVGGYPRGRVIEIYGPESSGKTTVALHAIAE
VQANGGQAAFIDAEHALDPVYASKLGVNIDELLLSQPDTGEQALEIAEALVRSGAIDIIIIDSVAALTPKAEIEGEMGDS
HVGLQARLMSQALRKLSGIINKSNTIAIFINQIREKIGVMFGNPETTPGGRALKFYSSVRLEVRRAETIKQGNDMVGNRT
KIKVVKNKVAPPFKTAEVDIMYGEGISKEGEIIDIGVEKDIVQKSGSWYAYEDERLGQGRENAKQFLKENPEVREEIAQK
IRVASGIGEQEYEVIEEPEENPTLFEE

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=174388 ATY39_RS03325 WP_066785806.1 711705..712748(+) (recA) [Rummeliibacillus stabekisii strain PP9]
GTGGACGAACGGAAAGCGGCATTAGATATGGCCTTAAAACAAATTGAAAAACAATTTGGTAAAGGCTCTGTAATGAAATT
AGGCGAGCAAGCAGATCGTAAAGTTTCTACATCTTCTACTGGATCTTTAGCTCTTGATACAGCACTTGGAGTGGGTGGCT
ATCCCCGCGGCCGTGTGATAGAAATATATGGACCAGAAAGCTCTGGTAAAACAACAGTAGCACTTCATGCCATCGCAGAA
GTACAAGCAAATGGAGGACAAGCAGCTTTCATAGATGCAGAGCATGCGCTTGATCCAGTTTATGCGTCCAAACTGGGCGT
AAACATTGATGAATTATTGCTTTCTCAACCAGATACAGGTGAGCAAGCACTAGAAATTGCAGAAGCACTAGTTCGCAGTG
GTGCTATTGATATTATTATAATCGACTCTGTTGCTGCTCTTACACCAAAAGCAGAAATTGAAGGCGAGATGGGGGATTCC
CATGTCGGTTTGCAAGCGCGTTTGATGTCTCAAGCATTGCGTAAGCTATCCGGTATTATTAATAAATCAAATACAATTGC
CATCTTCATTAACCAAATCCGTGAAAAAATCGGTGTAATGTTTGGGAATCCTGAAACTACACCAGGCGGAAGAGCGCTTA
AGTTCTATTCATCAGTTCGTTTAGAGGTGCGTCGTGCTGAAACAATTAAGCAAGGTAATGATATGGTCGGTAACCGTACT
AAAATCAAAGTAGTAAAAAATAAAGTAGCTCCACCTTTTAAAACTGCAGAAGTTGATATTATGTATGGCGAAGGAATCTC
TAAAGAGGGAGAAATCATCGATATCGGCGTAGAAAAAGATATCGTACAAAAGAGCGGCTCATGGTATGCGTATGAAGATG
AACGTTTAGGCCAAGGTCGTGAAAATGCAAAACAATTCCTTAAAGAGAATCCAGAAGTACGTGAAGAAATTGCACAAAAA
ATTCGGGTGGCTTCAGGTATTGGTGAGCAAGAATATGAAGTTATCGAAGAACCAGAAGAAAATCCTACTCTATTTGAAGA
GTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A143HAP3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

84.098

94.236

0.793
  recA Latilactobacillus sakei subsp. sakei 23K

73.199

100

0.732
  recA Streptococcus pneumoniae TIGR4

67.347

98.847

0.666
  recA Streptococcus pneumoniae Rx1

67.347

98.847

0.666
  recA Streptococcus pneumoniae D39

67.347

98.847

0.666
  recA Streptococcus pneumoniae R6

67.347

98.847

0.666
  recA Streptococcus mitis SK321

68.997

94.813

0.654
  recA Streptococcus mutans UA159

67.964

96.254

0.654
  recA Streptococcus mitis NCTC 12261

68.693

94.813

0.651
  recA Lactococcus lactis subsp. cremoris KW2

68.389

94.813

0.648
  recA Streptococcus pyogenes NZ131

68.389

94.813

0.648
  recA Neisseria gonorrhoeae MS11

64.451

99.712

0.643
  recA Neisseria gonorrhoeae strain FA1090

64.451

99.712

0.643
  recA Neisseria gonorrhoeae MS11

64.451

99.712

0.643
  recA Vibrio cholerae strain A1552

66.563

93.084

0.62
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.563

93.084

0.62
  recA Acinetobacter baylyi ADP1

61.318

100

0.617
  recA Helicobacter pylori 26695

62.647

97.983

0.614
  recA Helicobacter pylori strain NCTC11637

62.647

97.983

0.614
  recA Ralstonia pseudosolanacearum GMI1000

68.051

90.202

0.614
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.832

94.236

0.611
  recA Pseudomonas stutzeri DSM 10701

65.325

93.084

0.608
  recA Acinetobacter baumannii D1279779

65.325

93.084

0.608
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.303

94.236

0.597
  recA Glaesserella parasuis strain SC1401

63.551

92.507

0.588
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.848

93.084

0.585

Multiple sequence alignment