Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ATY39_RS03320 Genome accession   NZ_CP014806
Coordinates   710280..711533 (+) Length   417 a.a.
NCBI ID   WP_066785800.1    Uniprot ID   A0A143HA04
Organism   Rummeliibacillus stabekisii strain PP9     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 705280..716533
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ATY39_RS03300 (ATY39_03300) ymfI 706576..707304 (+) 729 WP_066785791.1 elongation factor P 5-aminopentanone reductase -
  ATY39_RS03305 (ATY39_03305) - 707770..708570 (+) 801 WP_066791839.1 DUF3388 domain-containing protein -
  ATY39_RS03310 (ATY39_03310) - 708588..709508 (+) 921 WP_066785794.1 helix-turn-helix domain-containing protein -
  ATY39_RS03315 (ATY39_03315) pgsA 709555..710133 (+) 579 WP_066785797.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ATY39_RS03320 (ATY39_03320) cinA 710280..711533 (+) 1254 WP_066785800.1 competence/damage-inducible protein A Machinery gene
  ATY39_RS03325 (ATY39_03325) recA 711705..712748 (+) 1044 WP_066785806.1 recombinase RecA Machinery gene
  ATY39_RS03330 (ATY39_03330) rny 712994..714550 (+) 1557 WP_066785809.1 ribonuclease Y -
  ATY39_RS03335 (ATY39_03335) - 714697..715494 (+) 798 WP_066785812.1 TIGR00282 family metallophosphoesterase -
  ATY39_RS03340 (ATY39_03340) - 715612..715878 (+) 267 WP_066785813.1 stage V sporulation protein S -
  ATY39_RS18275 (ATY39_03345) - 716149..716373 (+) 225 WP_066785817.1 SdpI family protein -

Sequence

Protein


Download         Length: 417 a.a.        Molecular weight: 45536.94 Da        Isoelectric Point: 5.4586

>NTDB_id=174387 ATY39_RS03320 WP_066785800.1 710280..711533(+) (cinA) [Rummeliibacillus stabekisii strain PP9]
MNAEIIAVGSELLLGQITNSNARFISSQLAEIGINVYYHTVVGDNPNRLLDAITIAENRSDLIIFSGGLGPTKDDLTKET
IAKHLHIELEEDKDAMKSIVEFFQNQNKPMTENNRKQALVLRGSHVLANKNGMAPGMMYTASNHTYILLPGPPKEIEPMF
QFEAKPLLTSLVSKGQIVSHVLRFYGIGEAELEDKLQHLLENQTNPTLAPLASDGEVTIRITANADTTEEAWKKIRVAKE
EILHIAGDYFYGVDDDSISSVLTKMLMKNELTIAAAESLTAGLFQAELANNPGVGEALLGGMVTYNEQVKINQLGMEKEV
IEQHGVVSSECASEMARLVKEKFGSTIGVGLTGAAGPQAHGNKPAGTVWIGIAIGDEPPHTYRLQLSGSRNTNRLRATKS
AFYRLIQLLIEKGYERA

Nucleotide


Download         Length: 1254 bp        

>NTDB_id=174387 ATY39_RS03320 WP_066785800.1 710280..711533(+) (cinA) [Rummeliibacillus stabekisii strain PP9]
ATGAATGCAGAAATTATTGCTGTGGGTTCTGAATTATTGTTAGGTCAAATAACTAATTCAAATGCACGGTTTATTTCAAG
TCAATTAGCTGAAATCGGAATAAATGTTTATTATCATACTGTTGTAGGTGACAATCCCAATCGACTACTTGATGCAATTA
CTATTGCAGAAAATCGCTCGGACCTTATTATTTTTTCAGGTGGATTAGGACCTACGAAGGATGACTTAACAAAGGAAACA
ATCGCAAAGCATTTACATATTGAACTCGAAGAAGACAAGGATGCAATGAAAAGCATAGTTGAATTCTTCCAAAACCAAAA
CAAACCAATGACTGAAAATAATCGCAAACAAGCGCTTGTTCTTAGAGGCTCACATGTTTTAGCTAATAAAAATGGCATGG
CTCCTGGCATGATGTATACAGCGAGCAATCACACTTACATTCTTTTACCTGGTCCGCCGAAGGAAATTGAACCCATGTTC
CAATTCGAAGCAAAACCATTGCTTACTTCTCTTGTTTCAAAAGGCCAAATTGTTTCTCACGTGCTTCGTTTTTACGGAAT
AGGCGAGGCTGAATTAGAAGATAAGCTTCAACATTTACTAGAAAACCAAACGAATCCAACGCTAGCACCATTAGCTTCTG
ATGGTGAAGTGACAATACGCATTACAGCGAATGCCGACACGACGGAAGAGGCATGGAAAAAAATTCGAGTAGCCAAAGAA
GAAATTTTACACATAGCAGGAGATTATTTTTACGGGGTAGACGATGATTCTATATCAAGCGTATTAACTAAAATGCTGAT
GAAGAATGAATTAACCATCGCTGCTGCTGAAAGTTTAACGGCTGGGCTATTCCAAGCAGAACTGGCTAATAATCCGGGGG
TGGGTGAAGCATTACTCGGCGGAATGGTCACATATAATGAGCAAGTAAAAATTAATCAATTAGGCATGGAGAAAGAAGTG
ATTGAACAGCATGGCGTTGTCAGCAGTGAATGTGCTAGTGAAATGGCGCGTTTAGTGAAGGAGAAATTTGGTTCGACTAT
TGGCGTTGGCTTAACAGGCGCAGCAGGTCCGCAAGCACACGGTAATAAACCAGCTGGTACTGTATGGATTGGTATTGCAA
TTGGTGATGAGCCACCGCATACGTATCGCCTCCAATTATCTGGCAGCCGTAATACAAATCGACTTCGTGCAACGAAATCT
GCATTCTATCGTTTAATTCAGCTATTAATTGAAAAGGGCTATGAAAGAGCCTAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Competence-damaged protein (CinA)

(256-408)

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A143HA04

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

51.942

98.801

0.513
  cinA Streptococcus mutans UA159

44.203

99.281

0.439
  cinA Streptococcus pneumoniae TIGR4

43.447

98.801

0.429
  cinA Streptococcus pneumoniae Rx1

43.204

98.801

0.427
  cinA Streptococcus pneumoniae R6

43.204

98.801

0.427
  cinA Streptococcus pneumoniae D39

42.961

98.801

0.424
  cinA Streptococcus mitis SK321

45.288

91.607

0.415
  cinA Streptococcus mitis NCTC 12261

44.764

91.607

0.41

Multiple sequence alignment