Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   A0O21_RS09295 Genome accession   NZ_CP014699
Coordinates   2016150..2017304 (-) Length   384 a.a.
NCBI ID   WP_067064534.1    Uniprot ID   -
Organism   Streptococcus pantholopis strain TA 26     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2011150..2022304
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A0O21_RS09265 (A0O21_09265) - 2012839..2013144 (-) 306 WP_067064522.1 DUF1292 domain-containing protein -
  A0O21_RS09270 (A0O21_09270) ruvX 2013200..2013619 (-) 420 WP_067064524.1 Holliday junction resolvase RuvX -
  A0O21_RS09275 (A0O21_09275) - 2013616..2013885 (-) 270 WP_067064526.1 IreB family regulatory phosphoprotein -
  A0O21_RS09280 (A0O21_09280) - 2014154..2014594 (+) 441 WP_067064528.1 LytTR family DNA-binding domain-containing protein -
  A0O21_RS09285 (A0O21_09285) - 2014745..2015203 (+) 459 WP_067064530.1 DUF3021 domain-containing protein -
  A0O21_RS09290 (A0O21_09290) spx 2015336..2015734 (-) 399 WP_067064532.1 transcriptional regulator Spx -
  A0O21_RS09295 (A0O21_09295) recA 2016150..2017304 (-) 1155 WP_067064534.1 recombinase RecA Machinery gene
  A0O21_RS09300 (A0O21_09300) cinA 2017457..2018716 (-) 1260 WP_067064536.1 competence/damage-inducible protein A Machinery gene
  A0O21_RS09305 (A0O21_09305) - 2018830..2019414 (-) 585 WP_067064538.1 DNA-3-methyladenine glycosylase I -
  A0O21_RS09310 (A0O21_09310) ruvA 2019527..2020117 (-) 591 WP_067064540.1 Holliday junction branch migration protein RuvA -
  A0O21_RS09315 (A0O21_09315) mutL 2020130..2022067 (-) 1938 WP_067064542.1 DNA mismatch repair endonuclease MutL -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 41464.10 Da        Isoelectric Point: 5.0510

>NTDB_id=173375 A0O21_RS09295 WP_067064534.1 2016150..2017304(-) (recA) [Streptococcus pantholopis strain TA 26]
MAKKAKKTEEITKKFGDERQKALNNALKNIEKDFGKGAVMRLGERAEQKVQVMSSGSLALDIALGVGGYPKGRIVEIYGP
ESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPAYAQALGVNIDELLLSQPDSGEQGLEIAGQLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGIMFGNPETTPGGRALKFYASVRLDVRG
NTQIKGTGSSKDTNVGKETKIKVVKNKVAPPFKEAFVEIMYGEGISRTGELLKIASELDIIQKAGAWYSYNNEKIGQGSE
NAKKFLSDHPEIFDEVDRQVRIAYGMLEEDQNSKASTKAEKQPEAETKEDDLVLDLDAAIEIEE

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=173375 A0O21_RS09295 WP_067064534.1 2016150..2017304(-) (recA) [Streptococcus pantholopis strain TA 26]
TTGGCTAAAAAAGCAAAAAAAACAGAAGAAATTACTAAAAAATTTGGGGATGAACGGCAAAAGGCCCTGAATAATGCTTT
AAAAAATATCGAAAAAGATTTTGGTAAAGGAGCAGTAATGCGCTTGGGAGAGCGTGCTGAGCAAAAAGTTCAGGTCATGA
GTTCAGGCAGTCTTGCACTGGATATCGCTCTTGGTGTTGGGGGCTATCCTAAAGGGCGTATCGTTGAAATCTATGGCCCT
GAGTCCTCTGGGAAAACAACAGTTGCCCTGCATGCTGTGGCGCAGGCGCAAAAAGAAGGCGGAATCGCTGCTTTTATTGA
TGCAGAACATGCCTTGGATCCAGCTTATGCACAGGCTCTTGGTGTTAATATTGACGAACTGCTTTTATCTCAGCCGGATT
CAGGTGAGCAAGGACTTGAAATTGCCGGGCAGCTGATTGACTCAGGAGCTGTTGATTTGGTTGTAGTCGATTCTGTGGCT
GCACTTGTTCCGCGGGCTGAAATTGACGGAGATATCGGCGACAGCCATGTAGGCCTGCAGGCACGTATGATGAGTCAGGC
GATGCGCAAGCTTTCAGCTTCAATTAATAAAACAAAGACAATCGCCATTTTTATTAATCAATTGCGTGAAAAAGTCGGCA
TCATGTTTGGCAACCCTGAAACAACTCCAGGCGGCCGGGCACTCAAGTTTTATGCGTCAGTGCGTTTAGACGTCCGCGGT
AACACACAGATTAAAGGGACAGGCAGCAGCAAAGATACCAATGTCGGTAAAGAAACTAAAATTAAGGTTGTCAAAAATAA
GGTAGCTCCTCCGTTTAAGGAAGCCTTTGTGGAAATCATGTACGGTGAAGGTATTTCTCGTACAGGGGAACTTTTGAAAA
TCGCCAGTGAATTGGATATCATTCAAAAGGCTGGGGCTTGGTATTCTTACAACAATGAAAAAATAGGTCAGGGATCAGAA
AATGCGAAAAAATTTCTGTCAGACCATCCTGAAATTTTTGATGAAGTGGATCGTCAAGTTCGAATAGCATATGGTATGCT
GGAAGAAGATCAAAACTCAAAAGCATCAACAAAGGCTGAAAAACAGCCTGAAGCAGAGACAAAAGAAGACGATCTTGTCT
TGGATCTTGACGCTGCCATTGAAATTGAAGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mutans UA159

86.458

100

0.865
  recA Streptococcus pyogenes NZ131

85.417

100

0.854
  recA Streptococcus pneumoniae Rx1

84.156

100

0.844
  recA Streptococcus pneumoniae D39

84.156

100

0.844
  recA Streptococcus pneumoniae R6

84.156

100

0.844
  recA Streptococcus pneumoniae TIGR4

84.156

100

0.844
  recA Streptococcus mitis NCTC 12261

84.073

99.74

0.839
  recA Streptococcus mitis SK321

83.551

99.74

0.833
  recA Lactococcus lactis subsp. cremoris KW2

76

91.146

0.693
  recA Latilactobacillus sakei subsp. sakei 23K

67.787

92.969

0.63
  recA Bacillus subtilis subsp. subtilis str. 168

68.389

85.677

0.586
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.062

88.281

0.539
  recA Acinetobacter baylyi ADP1

58.146

92.708

0.539
  recA Glaesserella parasuis strain SC1401

60

88.542

0.531
  recA Neisseria gonorrhoeae MS11

61.329

86.198

0.529
  recA Neisseria gonorrhoeae MS11

61.329

86.198

0.529
  recA Neisseria gonorrhoeae strain FA1090

61.329

86.198

0.529
  recA Acinetobacter baumannii D1279779

58.333

90.625

0.529
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.656

84.896

0.523
  recA Vibrio cholerae strain A1552

61.538

84.635

0.521
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.538

84.635

0.521
  recA Pseudomonas stutzeri DSM 10701

56.571

91.146

0.516
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.402

86.198

0.495
  recA Ralstonia pseudosolanacearum GMI1000

59.937

82.552

0.495
  recA Helicobacter pylori 26695

56.587

86.979

0.492
  recA Helicobacter pylori strain NCTC11637

56.587

86.979

0.492

Multiple sequence alignment