Detailed information NTG0172723

Bioinformatically predicted

Overview

• Name: comEA
• Type: Machinery gene
• Locus tag: AZE41_RS23230
• Genome accession: NZ_CP014616
• Coordinates: 1890817..1890972 (+)
• Length: 51 a.a.
• NCBI ID: WP_156476155.1
• Uniprot ID: -
• Organism: Sporosarcina psychrophila strain DSM 6497
• Function: dsDNA binding to the cell surface (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1885817..1895972

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AZE41_RS09030 (AZE41_09030)	aroE	1886707..1887534 (+)	828	WP_067208290.1	shikimate dehydrogenase	-
AZE41_RS09035 (AZE41_09035)	yhbY	1887541..1887831 (+)	291	WP_067208293.1	ribosome assembly RNA-binding protein YhbY	-
AZE41_RS09040 (AZE41_09040)	-	1887847..1888440 (+)	594	WP_067208296.1	nicotinate-nucleotide adenylyltransferase	-
AZE41_RS09045 (AZE41_09045)	yqeK	1888406..1888969 (+)	564	WP_067208299.1	bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK	-
AZE41_RS09050 (AZE41_09050)	rsfS	1888974..1889321 (+)	348	WP_067208302.1	ribosome silencing factor	-
AZE41_RS09055 (AZE41_09055)	-	1889318..1890058 (+)	741	WP_067208305.1	class I SAM-dependent DNA methyltransferase	-
AZE41_RS09060 (AZE41_09060)	-	1890300..1890806 (+)	507	WP_067208307.1	SLBB domain-containing protein	-
AZE41_RS23230	comEA	1890817..1890972 (+)	156	WP_156476155.1	ComEA family DNA-binding protein	Machinery gene
AZE41_RS09065 (AZE41_09065)	-	1891132..1891695 (+)	564	WP_067208309.1	ComE operon protein 2	-
AZE41_RS09070 (AZE41_09070)	-	1891692..1893983 (+)	2292	WP_067208312.1	DNA internalization-related competence protein ComEC/Rec2	-
AZE41_RS22115	-	1894038..1894172 (-)	135	WP_082786541.1	YqzM family protein	-
AZE41_RS09075 (AZE41_09075)	holA	1894546..1895562 (+)	1017	WP_067208314.1	DNA polymerase III subunit delta	-
AZE41_RS09080 (AZE41_09080)	rpsT	1895624..1895875 (-)	252	WP_067208317.1	30S ribosomal protein S20	-

Sequence

Protein

• Length: 51 a.a.
• Molecular weight: 5494.23 Da
• Isoelectric Point: 5.6750

>NTDB_id=172723 AZE41_RS23230 WP_156476155.1 1890817..1890972(+) (comEA) [Sporosarcina psychrophila strain DSM 6497]
MTIPGVGPSKAAAIVQYRTDHGDFKSPESLMEVSGIGQKTFEKLESQITVN

Nucleotide

• Length: 156 bp

>NTDB_id=172723 AZE41_RS23230 WP_156476155.1 1890817..1890972(+) (comEA) [Sporosarcina psychrophila strain DSM 6497]
ATGACGATCCCAGGTGTGGGACCCTCAAAAGCGGCAGCAATTGTTCAATACCGAACGGATCATGGCGATTTTAAATCACC
GGAATCATTGATGGAAGTGTCTGGAATCGGTCAGAAAACATTTGAAAAACTAGAATCTCAGATTACTGTGAATTAA

Domains

Predicted by InterproScan.

• Helix-hairpin-helix motif (HHH_3) (2-49)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comEA	Latilactobacillus sakei subsp. sakei 23K	56	98.039	0.549
comEA	Bacillus subtilis subsp. subtilis str. 168	58.333	94.118	0.549
comEA	Staphylococcus aureus MW2	50	98.039	0.49
comEA	Staphylococcus aureus N315	50	98.039	0.49
comE1/comEA	Haemophilus influenzae Rd KW20	51.064	92.157	0.471
comEA	Legionella pneumophila str. Paris	44.444	100	0.471
comEA	Legionella pneumophila strain ERS1305867	44.444	100	0.471
comE	Neisseria gonorrhoeae MS11	46.939	96.078	0.451
comE	Neisseria gonorrhoeae MS11	46.939	96.078	0.451
comEA	Lactococcus lactis subsp. cremoris KW2	46.939	96.078	0.451
comE	Neisseria gonorrhoeae MS11	46.939	96.078	0.451
comE	Neisseria gonorrhoeae MS11	46.939	96.078	0.451
comEA/comE1	Glaesserella parasuis strain SC1401	53.659	80.392	0.431
comEA/celA/cilE	Streptococcus pneumoniae D39	44.898	96.078	0.431
comEA/celA/cilE	Streptococcus pneumoniae TIGR4	44.898	96.078	0.431
comEA/celA/cilE	Streptococcus mitis NCTC 12261	44.898	96.078	0.431
comEA/celA/cilE	Streptococcus pneumoniae Rx1	44.898	96.078	0.431
comEA/celA/cilE	Streptococcus pneumoniae R6	44.898	96.078	0.431
comEA/celA/cilE	Streptococcus mitis SK321	44.898	96.078	0.431
comEA	Vibrio parahaemolyticus RIMD 2210633	47.826	90.196	0.431
comEA	Acinetobacter baylyi ADP1	43.75	94.118	0.412
comEA	Acinetobacter baumannii strain A118	43.75	94.118	0.412
comEA	Streptococcus thermophilus LMD-9	42.857	96.078	0.412
Cj0011c	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	42.857	96.078	0.412
comEA	Vibrio campbellii strain DS40M4	45.652	90.196	0.412
comEA	Acinetobacter baumannii D1279779	41.667	94.118	0.392
comA	Synechocystis sp. PCC 6803	39.583	94.118	0.373