Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AWC33_RS07165 Genome accession   NZ_CP013921
Coordinates   1490534..1491595 (-) Length   353 a.a.
NCBI ID   WP_040166590.1    Uniprot ID   -
Organism   Lacticaseibacillus paracasei strain KL1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1485534..1496595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AWC33_RS07145 (AWC33_07145) - 1485953..1486414 (-) 462 WP_003583965.1 ComF family protein -
  AWC33_RS07150 (AWC33_07150) - 1486627..1487889 (-) 1263 WP_016365283.1 helicase-related protein -
  AWC33_RS07155 (AWC33_07155) - 1487917..1488567 (+) 651 WP_003593868.1 YigZ family protein -
  AWC33_RS07160 (AWC33_07160) rny 1488661..1490232 (-) 1572 WP_003657913.1 ribonuclease Y -
  AWC33_RS07165 (AWC33_07165) recA 1490534..1491595 (-) 1062 WP_040166590.1 recombinase RecA Machinery gene
  AWC33_RS07170 (AWC33_07170) cinA 1491652..1492893 (-) 1242 WP_040166587.1 competence/damage-inducible protein A Machinery gene
  AWC33_RS07175 (AWC33_07175) pgsA 1493268..1493861 (-) 594 WP_003564171.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AWC33_RS07180 (AWC33_07180) - 1493858..1494787 (-) 930 WP_003593861.1 helix-turn-helix domain-containing protein -
  AWC33_RS07185 (AWC33_07185) ymfI 1494874..1495602 (-) 729 WP_016377336.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 37905.13 Da        Isoelectric Point: 5.8234

>NTDB_id=166092 AWC33_RS07165 WP_040166590.1 1490534..1491595(-) (recA) [Lacticaseibacillus paracasei strain KL1]
MAGDERQKALDVALKKIEKNFGKGAIMRMGAKADTRVSVVSSGSLAVDDALGVGSFPRGRIVEIYGPESSGKTTVALHAV
AEVQKQGGTAAYIDAENAMDPKYATALGVNIDELLLSQPDTGEQGLEIADELVASGAIDIVVIDSVAALVPRAEIEGDMG
DAHVGLQARLMSQALRKLSGSINKTKTIALFINQIREKVGIIFGSPETTPGGRALKFYATVRLEIRRSEQIKTGADVVGN
RTKIKVVKNKVAPPFRTAIVDIMYGQGISQTGELVDMAVERDIVEKAWSWYAYQGERIGQGRENAKTYLDNHADLQQTIK
QQVRVAYGMAAAPGRETASVSEDQPEIHQQAEV

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=166092 AWC33_RS07165 WP_040166590.1 1490534..1491595(-) (recA) [Lacticaseibacillus paracasei strain KL1]
ATGGCAGGAGACGAACGCCAGAAAGCATTGGATGTTGCACTGAAAAAGATTGAAAAAAATTTTGGTAAAGGCGCGATTAT
GCGAATGGGTGCTAAGGCGGACACGCGCGTTTCCGTTGTCTCTAGCGGCTCACTTGCCGTTGATGATGCACTTGGTGTTG
GGAGCTTTCCGCGCGGACGAATTGTCGAAATTTATGGACCGGAAAGTTCCGGCAAAACAACCGTCGCGCTGCATGCTGTT
GCTGAAGTGCAGAAGCAAGGCGGTACTGCCGCCTATATTGATGCCGAGAATGCGATGGATCCCAAGTACGCAACTGCTTT
GGGCGTCAATATTGACGAATTATTGCTCTCCCAGCCAGACACAGGCGAACAAGGGCTGGAGATTGCTGATGAACTAGTCG
CGTCTGGTGCCATTGATATTGTGGTGATTGATTCAGTTGCTGCTTTGGTGCCGCGGGCTGAGATTGAGGGCGATATGGGG
GATGCCCATGTTGGCTTGCAAGCCCGATTAATGTCACAGGCGTTACGTAAGTTATCCGGTTCCATCAATAAGACAAAAAC
GATTGCTTTATTCATTAATCAGATTCGTGAGAAAGTCGGGATCATTTTTGGGAGTCCGGAAACGACACCAGGTGGTCGTG
CATTGAAGTTTTATGCGACTGTTCGGTTAGAAATCCGGCGGTCGGAACAGATCAAGACAGGCGCAGATGTCGTCGGCAAT
CGCACTAAAATCAAAGTGGTCAAGAATAAGGTGGCACCGCCTTTTCGAACAGCAATTGTGGATATCATGTATGGCCAAGG
CATTTCGCAAACTGGCGAACTTGTCGACATGGCCGTTGAGAGAGATATTGTTGAAAAAGCATGGTCATGGTACGCGTATC
AAGGTGAACGCATCGGCCAAGGTCGCGAAAACGCTAAGACATATCTTGATAACCACGCTGATCTTCAGCAGACGATTAAA
CAACAGGTTCGCGTGGCTTATGGTATGGCAGCCGCACCTGGTCGGGAGACGGCTTCGGTCAGTGAAGATCAACCCGAAAT
ACATCAACAGGCTGAAGTATGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

78.386

98.3

0.771
  recA Bacillus subtilis subsp. subtilis str. 168

73.538

92.068

0.677
  recA Streptococcus mutans UA159

67.341

98.017

0.66
  recA Streptococcus mitis NCTC 12261

67.341

98.017

0.66
  recA Streptococcus mitis SK321

67.341

98.017

0.66
  recA Streptococcus pyogenes NZ131

70

93.484

0.654
  recA Streptococcus pneumoniae Rx1

68.882

93.768

0.646
  recA Streptococcus pneumoniae D39

68.882

93.768

0.646
  recA Streptococcus pneumoniae R6

68.882

93.768

0.646
  recA Streptococcus pneumoniae TIGR4

68.882

93.768

0.646
  recA Lactococcus lactis subsp. cremoris KW2

68.278

93.768

0.64
  recA Ralstonia pseudosolanacearum GMI1000

64.856

88.669

0.575
  recA Neisseria gonorrhoeae MS11

61.774

92.635

0.572
  recA Neisseria gonorrhoeae MS11

61.774

92.635

0.572
  recA Neisseria gonorrhoeae strain FA1090

61.774

92.635

0.572
  recA Acinetobacter baylyi ADP1

57.849

97.45

0.564
  recA Pseudomonas stutzeri DSM 10701

57.941

96.317

0.558
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.681

91.501

0.555
  recA Acinetobacter baumannii D1279779

60.436

90.935

0.55
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

58.41

92.635

0.541
  recA Glaesserella parasuis strain SC1401

54.261

99.717

0.541
  recA Helicobacter pylori strain NCTC11637

57.576

93.484

0.538
  recA Helicobacter pylori 26695

57.576

93.484

0.538
  recA Vibrio cholerae O1 biovar El Tor strain E7946

58.567

90.935

0.533
  recA Vibrio cholerae strain A1552

58.567

90.935

0.533
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

55.657

92.635

0.516

Multiple sequence alignment