Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   AWC33_RS07170 Genome accession   NZ_CP013921
Coordinates   1491652..1492893 (-) Length   413 a.a.
NCBI ID   WP_040166587.1    Uniprot ID   -
Organism   Lacticaseibacillus paracasei strain KL1     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1486652..1497893
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AWC33_RS07155 (AWC33_07155) - 1487917..1488567 (+) 651 WP_003593868.1 YigZ family protein -
  AWC33_RS07160 (AWC33_07160) rny 1488661..1490232 (-) 1572 WP_003657913.1 ribonuclease Y -
  AWC33_RS07165 (AWC33_07165) recA 1490534..1491595 (-) 1062 WP_040166590.1 recombinase RecA Machinery gene
  AWC33_RS07170 (AWC33_07170) cinA 1491652..1492893 (-) 1242 WP_040166587.1 competence/damage-inducible protein A Machinery gene
  AWC33_RS07175 (AWC33_07175) pgsA 1493268..1493861 (-) 594 WP_003564171.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AWC33_RS07180 (AWC33_07180) - 1493858..1494787 (-) 930 WP_003593861.1 helix-turn-helix domain-containing protein -
  AWC33_RS07185 (AWC33_07185) ymfI 1494874..1495602 (-) 729 WP_016377336.1 elongation factor P 5-aminopentanone reductase -
  AWC33_RS07190 (AWC33_07190) yfmH 1495602..1496894 (-) 1293 WP_003661348.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 44203.59 Da        Isoelectric Point: 5.9999

>NTDB_id=166093 AWC33_RS07170 WP_040166587.1 1491652..1492893(-) (cinA) [Lacticaseibacillus paracasei strain KL1]
MQAEIIAVGTEILMGQITNTNGAYMAKQLTALGIDSYHQQVVGDNGLRLGEAIKLAESRSNLVILIGGLGPTPDDLTKQT
LAAHLNRKLVEDPDAMAKLQARVKQQQRPMTPNNQLQAMYPEGADILVNRVGLAVGAWIVNGQHTYVLLPGPPKEFVPMV
DHELLPRLAKWSGHAEIMVSRVLRFFGIGESQLVTDLDDLIANQTDPTIATYIKDHEVTVRVTASGATEKDADAKLEPMI
GAIMDRDGQYFYGYGDDNSLAKEVVKTLAANDMQITAAESLTAGAFQAALGDVPGVSTYFKGGFVTYSLATKAAFLAIDA
CELAAHGVVSAFTAKAMAEHARRKAAADISVSFTGVAGPDTLEGQPAGTVWIGLARRGQLPEAHVYHFPGGRNDVRQRAV
MTGMMLALRALQA

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=166093 AWC33_RS07170 WP_040166587.1 1491652..1492893(-) (cinA) [Lacticaseibacillus paracasei strain KL1]
ATGCAAGCAGAGATTATTGCTGTCGGGACAGAGATCCTGATGGGACAGATTACTAACACAAATGGTGCCTATATGGCTAA
GCAACTGACAGCACTGGGTATTGATAGCTACCATCAACAGGTGGTGGGAGACAACGGGCTGCGACTTGGGGAGGCCATTA
AGTTGGCGGAAAGTCGCAGTAATTTAGTTATTTTGATTGGCGGGTTAGGACCGACACCAGATGATCTGACCAAGCAAACA
TTGGCAGCGCACTTGAACCGCAAATTGGTTGAAGATCCTGACGCTATGGCTAAATTACAGGCGCGCGTCAAGCAACAGCA
GCGGCCAATGACGCCTAATAATCAATTACAGGCCATGTATCCGGAAGGCGCCGATATTTTGGTCAATCGGGTTGGCTTAG
CGGTTGGCGCGTGGATCGTCAATGGGCAGCACACCTATGTCTTATTGCCGGGACCACCGAAGGAATTCGTTCCGATGGTT
GATCATGAACTGCTGCCGCGGCTAGCAAAATGGAGCGGCCACGCGGAAATTATGGTCAGCCGGGTCTTACGTTTCTTTGG
CATTGGCGAATCGCAACTAGTGACAGATCTGGACGACTTGATTGCCAACCAAACCGATCCGACCATTGCAACTTATATCA
AGGATCATGAGGTGACGGTGCGCGTCACTGCCAGTGGCGCTACCGAAAAAGACGCTGATGCAAAGTTAGAACCAATGATC
GGTGCCATCATGGATCGTGATGGTCAATATTTTTACGGCTACGGTGACGACAATAGTTTGGCAAAAGAGGTTGTGAAGAC
GCTTGCGGCAAATGATATGCAAATTACTGCAGCTGAGAGTTTGACTGCTGGCGCATTTCAAGCAGCGTTAGGCGATGTGC
CGGGGGTATCCACTTATTTTAAGGGCGGTTTTGTCACTTACTCACTTGCAACAAAGGCCGCTTTTTTGGCAATTGATGCT
TGCGAATTAGCGGCACACGGAGTTGTCAGCGCATTTACAGCCAAGGCGATGGCTGAACATGCTCGGCGTAAGGCAGCGGC
GGATATAAGTGTCAGCTTTACCGGCGTTGCCGGTCCAGACACGCTGGAAGGACAGCCTGCTGGTACGGTTTGGATCGGTT
TAGCGCGGCGCGGCCAACTGCCTGAAGCACATGTTTACCATTTTCCTGGCGGTCGCAATGATGTTCGGCAGCGTGCTGTG
ATGACTGGTATGATGCTTGCATTAAGGGCGCTGCAGGCCTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(258-410)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis NCTC 12261

52.123

100

0.535
  cinA Streptococcus mitis SK321

52.009

100

0.533
  cinA Streptococcus pneumoniae TIGR4

51.651

100

0.53
  cinA Streptococcus pneumoniae R6

51.179

100

0.525
  cinA Streptococcus pneumoniae Rx1

51.179

100

0.525
  cinA Streptococcus mutans UA159

52.415

100

0.525
  cinA Streptococcus pneumoniae D39

50.943

100

0.523
  cinA Bacillus subtilis subsp. subtilis str. 168

44.769

99.516

0.446
  cinA Streptococcus suis isolate S10

42.328

91.525

0.387

Multiple sequence alignment