Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AOX59_RS02690 Genome accession   NZ_CP013862
Coordinates   541877..542920 (+) Length   347 a.a.
NCBI ID   WP_068441454.1    Uniprot ID   A0A0U3W348
Organism   Lentibacillus amyloliquefaciens strain LAM0015     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 536877..547920
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOX59_RS02665 (AOX59_02660) - 537580..537837 (+) 258 WP_068441442.1 DUF3243 domain-containing protein -
  AOX59_RS02670 (AOX59_02665) - 537992..538777 (+) 786 WP_068441444.1 DUF3388 domain-containing protein -
  AOX59_RS02675 (AOX59_02670) - 538881..539798 (+) 918 WP_068441447.1 helix-turn-helix domain-containing protein -
  AOX59_RS02680 (AOX59_02675) pgsA 539873..540451 (+) 579 WP_068448101.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AOX59_RS02685 (AOX59_02680) cinA 540451..541695 (+) 1245 WP_068441450.1 competence/damage-inducible protein A Machinery gene
  AOX59_RS02690 (AOX59_02685) recA 541877..542920 (+) 1044 WP_068441454.1 recombinase RecA Machinery gene
  AOX59_RS02695 (AOX59_02690) rny 543351..544916 (+) 1566 WP_068441457.1 ribonuclease Y -
  AOX59_RS02700 (AOX59_02695) - 545011..545808 (+) 798 WP_068441460.1 TIGR00282 family metallophosphoesterase -
  AOX59_RS02705 (AOX59_02700) - 545955..546215 (+) 261 WP_068441464.1 stage V sporulation protein S -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37531.47 Da        Isoelectric Point: 4.8474

>NTDB_id=165285 AOX59_RS02690 WP_068441454.1 541877..542920(+) (recA) [Lentibacillus amyloliquefaciens strain LAM0015]
MSDRKQALDMALKQIEKQFGKGSIMKLGEQEGQKIASIPSGSLALDVALGIGGYPRGRVVEIYGPESSGKTTVALHAIAE
AQQQGGQAAFIDAEHALDPTYARALGVDIEELLLSQPDTGEQALEIAEALVRSGAVDIIVVDSVAALVPKAEIEGEMGDA
HVGLQARLMSQALRKLSGAINKSKTTAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAETLKQGNEMVGNKT
RLKVVKNKVAPPFRQAEVDIMYGEGISKVGEILDIGSDLDIVQKSGAWYSYNGERLGQGRENAKQFLKENETIRLEVQQA
VRGHYNLDETPEEETEEEDANKGSLDA

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=165285 AOX59_RS02690 WP_068441454.1 541877..542920(+) (recA) [Lentibacillus amyloliquefaciens strain LAM0015]
TTGTCAGATAGAAAACAAGCTTTAGATATGGCGTTGAAACAAATTGAAAAACAGTTCGGTAAAGGTTCTATTATGAAACT
GGGTGAACAGGAAGGTCAAAAGATTGCATCAATTCCAAGCGGCTCGCTCGCCTTAGATGTAGCTTTAGGAATTGGCGGTT
ATCCAAGAGGGCGCGTTGTGGAAATTTACGGTCCGGAATCCTCCGGTAAAACAACGGTTGCACTGCATGCTATTGCAGAA
GCTCAGCAGCAGGGCGGACAAGCTGCTTTTATCGATGCTGAACATGCGCTTGATCCGACATATGCGAGAGCCTTGGGTGT
TGATATTGAAGAATTACTTTTATCACAGCCTGATACCGGTGAACAGGCTCTGGAAATAGCTGAAGCACTGGTTCGAAGTG
GTGCTGTTGATATTATTGTAGTGGATTCAGTAGCAGCCCTGGTTCCTAAAGCAGAAATTGAAGGCGAAATGGGAGATGCG
CATGTTGGGCTGCAGGCACGTTTGATGTCTCAGGCTCTCAGAAAACTATCCGGCGCCATCAACAAGTCTAAAACGACTGC
TATTTTCATTAACCAGATCAGAGAGAAAGTCGGCGTGATGTTCGGAAATCCGGAAACGACTCCGGGCGGTCGGGCTCTTA
AATTCTATTCCTCTGTCAGGCTGGAAGTACGGCGTGCTGAAACGCTTAAACAAGGAAATGAAATGGTTGGTAATAAAACA
AGATTAAAAGTTGTTAAAAACAAAGTTGCACCGCCTTTCAGGCAAGCAGAGGTTGATATCATGTACGGTGAAGGGATTTC
CAAAGTAGGTGAAATTCTCGATATCGGATCAGATCTTGATATCGTCCAAAAAAGCGGTGCATGGTATTCGTATAACGGAG
AGAGGCTTGGACAAGGGCGGGAAAACGCCAAACAGTTCCTCAAAGAAAATGAAACTATCAGGCTCGAAGTACAACAAGCT
GTGCGCGGGCATTATAATCTGGATGAGACACCTGAAGAAGAAACAGAAGAAGAAGATGCCAATAAGGGCAGCCTTGATGC
GTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(6-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0U3W348

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

85.366

94.524

0.807
  recA Latilactobacillus sakei subsp. sakei 23K

71.93

98.559

0.709
  recA Streptococcus mutans UA159

68.023

99.135

0.674
  recA Streptococcus pneumoniae Rx1

67.544

98.559

0.666
  recA Streptococcus pneumoniae D39

67.544

98.559

0.666
  recA Streptococcus pneumoniae R6

67.544

98.559

0.666
  recA Streptococcus pneumoniae TIGR4

67.544

98.559

0.666
  recA Streptococcus mitis NCTC 12261

68.788

95.101

0.654
  recA Streptococcus mitis SK321

68.485

95.101

0.651
  recA Streptococcus pyogenes NZ131

68.196

94.236

0.643
  recA Ralstonia pseudosolanacearum GMI1000

63.068

100

0.64
  recA Lactococcus lactis subsp. cremoris KW2

65.075

96.542

0.628
  recA Neisseria gonorrhoeae strain FA1090

64.392

97.118

0.625
  recA Neisseria gonorrhoeae MS11

64.392

97.118

0.625
  recA Neisseria gonorrhoeae MS11

64.392

97.118

0.625
  recA Pseudomonas stutzeri DSM 10701

63.501

97.118

0.617
  recA Helicobacter pylori 26695

62.059

97.983

0.608
  recA Acinetobacter baylyi ADP1

61.516

98.847

0.608
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.421

92.507

0.605
  recA Helicobacter pylori strain NCTC11637

61.765

97.983

0.605
  recA Glaesserella parasuis strain SC1401

65.204

91.931

0.599
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.883

93.948

0.591
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.75

92.219

0.588
  recA Vibrio cholerae strain A1552

63.75

92.219

0.588
  recA Acinetobacter baumannii D1279779

62.5

92.219

0.576
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.502

92.507

0.55

Multiple sequence alignment