Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   BARD7_RS05865 Genome accession   NZ_CP016913
Coordinates   1186799..1187935 (+) Length   378 a.a.
NCBI ID   WP_115998307.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain RD7-7     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1181799..1192935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BARD7_RS05840 (BARD7_01191) - 1182571..1183146 (+) 576 Protein_1117 MFS transporter -
  BARD7_RS05845 (BARD7_01192) - 1183218..1184216 (+) 999 WP_065981225.1 LacI family DNA-binding transcriptional regulator -
  BARD7_RS19420 (BARD7_01193) - 1184291..1184425 (+) 135 WP_257784743.1 hypothetical protein -
  BARD7_RS05850 (BARD7_01194) - 1184365..1185186 (+) 822 Protein_1120 UxaA family hydrolase -
  BARD7_RS05855 (BARD7_01195) - 1185219..1185983 (-) 765 WP_065981227.1 sulfite exporter TauE/SafE family protein -
  BARD7_RS05860 (BARD7_01196) - 1186127..1186594 (-) 468 WP_065981228.1 DinB family protein -
  BARD7_RS05865 (BARD7_01197) rapC 1186799..1187935 (+) 1137 WP_115998307.1 Rap family tetratricopeptide repeat protein Regulator
  BARD7_RS18885 (BARD7_01198) - 1187925..1188059 (+) 135 WP_142746858.1 PhrA family phosphatase inhibitor -
  BARD7_RS05870 (BARD7_01199) - 1188203..1189156 (+) 954 WP_065981230.1 N-acetylmuramoyl-L-alanine amidase -
  BARD7_RS05875 (BARD7_01200) - 1189194..1189571 (-) 378 WP_065981231.1 PH domain-containing protein -
  BARD7_RS05880 (BARD7_01201) - 1189681..1190283 (+) 603 WP_065981232.1 poly-gamma-glutamate hydrolase family protein -
  BARD7_RS05885 (BARD7_01202) - 1190470..1191060 (-) 591 WP_013351933.1 ImmA/IrrE family metallo-endopeptidase -
  BARD7_RS05890 (BARD7_01203) xre 1191208..1191546 (-) 339 WP_065981233.1 HTH-type transcriptional regulator Xre -
  BARD7_RS05895 (BARD7_01204) - 1191737..1191916 (+) 180 WP_045506729.1 hypothetical protein -
  BARD7_RS05900 (BARD7_01205) - 1191906..1192733 (+) 828 WP_065981234.1 phage portal protein -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 45021.29 Da        Isoelectric Point: 4.9782

>NTDB_id=165285 BARD7_RS05865 WP_115998307.1 1186799..1187935(+) (rapC) [Bacillus amyloliquefaciens strain RD7-7]
MRMKQTIPSSFVGLKINEWYTHIRQFHVLEAERVKREVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPLKEDPSQPE
FSELLEDIEGNQYKLTGLLDYYFNFFRGMYEFKQKMFLNAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQSYETYNVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKQEGNPRLISSALYNLGNCYEKMGDLSK
AAEYFETSVSICKSEKFDNLPHSIYSLTQVLYKQNTTAEAEKQYRLGLSIAREYNDELFVNLFQFLHALYGKKMDNASVR
HTFDFLEEHMLYPYVEELAHDAAKFYMKHGQPEKALTFYEKMVNAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=165285 BARD7_RS05865 WP_115998307.1 1186799..1187935(+) (rapC) [Bacillus amyloliquefaciens strain RD7-7]
TTGAGGATGAAGCAGACTATTCCGTCCTCTTTTGTCGGGCTCAAAATTAATGAATGGTACACCCATATCCGGCAGTTTCA
CGTCCTTGAGGCGGAGCGCGTCAAACGTGAAGTAGAGAGAGAAATCGAGGATATGGAAGAAGATCAGGATCTGCTCCTGT
ATTATTCATTAATGGAATTCAGACACCGTGTCATGCTGGATTACATTAAGCCCTTAAAGGAGGACCCTTCTCAGCCTGAG
TTTTCAGAATTATTGGAAGACATTGAAGGCAACCAGTATAAACTGACAGGACTGCTTGATTACTATTTTAATTTTTTTCG
AGGAATGTATGAATTTAAACAGAAAATGTTCCTAAACGCCATGATGTATTACAAACGGGCTGAAAAAAACCTCGCACTCG
TTTCTGATGACATCGAGAAAGCTGAGTTTGCTTTTAAAATGGCCGAGATTTTTTACAACTTGAAACAAACCTACGTCTCC
ATGAGCTATGCGGTACAAGCCCTTGAAACGTACCAATCGTATGAGACGTACAACGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGGAATTATGATGACATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTTGCTTTAGATCTTGCAAAAC
AAGAAGGCAATCCCCGTCTTATCAGTTCAGCCTTATATAATCTCGGAAACTGTTACGAAAAAATGGGAGACCTCTCTAAA
GCAGCCGAATATTTTGAGACATCCGTTTCCATTTGCAAGTCAGAAAAGTTCGATAATCTTCCGCATTCTATTTACTCATT
AACACAGGTTCTTTATAAACAGAACACCACCGCCGAAGCAGAGAAGCAATATCGCCTTGGGCTGAGTATCGCCCGCGAAT
ACAATGATGAATTGTTTGTAAATCTCTTTCAATTTTTACATGCGTTATACGGCAAGAAAATGGATAATGCGTCCGTCAGG
CACACGTTTGATTTTCTGGAGGAACACATGCTGTATCCGTATGTGGAAGAATTGGCGCATGACGCTGCCAAATTTTACAT
GAAACACGGACAGCCTGAAAAAGCACTCACGTTTTATGAAAAAATGGTGAACGCCCAAAAACAAATTCAGAGAGGAGATT
GTCTATATGAAATCTAA

Domains

Predicted by InterProScan.

Tetratricopeptide repeat (TPR_12)

(199-254)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.415

99.471

0.442
  rapF Bacillus subtilis subsp. subtilis str. 168

42.48

100

0.426

Multiple sequence alignment