Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   AOX59_RS02685 Genome accession   NZ_CP013862
Coordinates   540451..541695 (+) Length   414 a.a.
NCBI ID   WP_068441450.1    Uniprot ID   A0A0U4E3X0
Organism   Lentibacillus amyloliquefaciens strain LAM0015     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 535451..546695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AOX59_RS02655 (AOX59_02650) yfmH 535497..536780 (+) 1284 WP_068441435.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  AOX59_RS02660 (AOX59_02655) ymfI 536789..537511 (+) 723 WP_068441439.1 elongation factor P 5-aminopentanone reductase -
  AOX59_RS02665 (AOX59_02660) - 537580..537837 (+) 258 WP_068441442.1 DUF3243 domain-containing protein -
  AOX59_RS02670 (AOX59_02665) - 537992..538777 (+) 786 WP_068441444.1 DUF3388 domain-containing protein -
  AOX59_RS02675 (AOX59_02670) - 538881..539798 (+) 918 WP_068441447.1 helix-turn-helix domain-containing protein -
  AOX59_RS02680 (AOX59_02675) pgsA 539873..540451 (+) 579 WP_068448101.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AOX59_RS02685 (AOX59_02680) cinA 540451..541695 (+) 1245 WP_068441450.1 competence/damage-inducible protein A Machinery gene
  AOX59_RS02690 (AOX59_02685) recA 541877..542920 (+) 1044 WP_068441454.1 recombinase RecA Machinery gene
  AOX59_RS02695 (AOX59_02690) rny 543351..544916 (+) 1566 WP_068441457.1 ribonuclease Y -
  AOX59_RS02700 (AOX59_02695) - 545011..545808 (+) 798 WP_068441460.1 TIGR00282 family metallophosphoesterase -
  AOX59_RS02705 (AOX59_02700) - 545955..546215 (+) 261 WP_068441464.1 stage V sporulation protein S -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 45209.41 Da        Isoelectric Point: 5.3556

>NTDB_id=165284 AOX59_RS02685 WP_068441450.1 540451..541695(+) (cinA) [Lentibacillus amyloliquefaciens strain LAM0015]
MKNMSAEIVAVGTELLLGQIANTNAQWISDELASIGVNVHHHSVVGDNLERVENQFRVSGERSDIIIITGGLGPTEDDLT
REAFQKITNMEIIEDERSMNKIESFFETREMEMTPNNKKQARVFAGSDVIKNQTGMAPGMIVSNEGKTWIFLPGVPREMK
RMMTDSVLPRLKNQSGGGSVIKSVMLRFIGIGESTLEHELSDLIKRQTNPTIAPLAQSEGVAIRLTAKADSDNEAAAVIN
RTKQEILKRTGTYYYGDDDRSLAEEVSALLKKNNLTIGAAESLTGGQFTDRLISIPGASNVCCGGIICYDAQVKEKVLHV
SSDIINQEGTVSKACADAMAENVRLLLDADIGISFTGVAGPDTSEGHSPGTVFIAVYDQSGKQLTEKFNFHGDRQAIRKR
TVLKGYELLFKLLK

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=165284 AOX59_RS02685 WP_068441450.1 540451..541695(+) (cinA) [Lentibacillus amyloliquefaciens strain LAM0015]
ATGAAAAATATGAGCGCTGAAATTGTTGCAGTTGGTACAGAGCTGTTATTGGGACAAATTGCGAATACAAATGCCCAATG
GATTTCTGATGAATTGGCTTCAATTGGGGTGAATGTCCATCATCATTCCGTTGTCGGTGATAATCTTGAGCGTGTTGAAA
ATCAATTTCGTGTATCCGGCGAACGCTCTGATATCATTATCATCACGGGAGGGCTGGGTCCGACAGAAGATGATTTGACC
CGTGAAGCCTTTCAGAAAATAACAAACATGGAAATCATTGAAGATGAACGATCCATGAACAAAATTGAATCATTCTTTGA
AACGCGCGAAATGGAAATGACGCCAAATAACAAAAAACAGGCCCGTGTGTTTGCCGGTTCCGATGTTATTAAAAATCAGA
CCGGAATGGCACCAGGAATGATTGTTTCAAATGAGGGGAAGACTTGGATATTTTTACCCGGGGTGCCGCGGGAAATGAAA
CGAATGATGACTGACAGTGTGCTGCCCCGCTTAAAAAATCAGAGTGGAGGCGGCAGTGTCATAAAATCGGTTATGCTCCG
TTTTATAGGGATTGGCGAATCCACTCTTGAACACGAGTTGAGTGATTTGATCAAGCGACAAACCAATCCGACGATAGCTC
CATTGGCACAAAGTGAAGGTGTTGCAATCAGACTGACTGCCAAAGCTGATTCTGACAATGAAGCAGCTGCAGTCATTAAC
CGTACAAAACAAGAAATTCTTAAAAGAACAGGCACTTATTATTACGGTGATGATGACAGGTCATTGGCTGAAGAGGTTTC
TGCCTTGCTGAAAAAAAACAATTTAACAATTGGAGCTGCTGAGAGCTTAACGGGGGGCCAATTCACGGATAGGCTCATCT
CAATTCCGGGCGCTTCAAATGTCTGCTGTGGCGGAATTATCTGCTATGATGCTCAAGTAAAAGAAAAGGTGCTGCATGTT
TCATCAGACATCATTAATCAAGAAGGGACTGTCAGTAAAGCGTGTGCCGATGCAATGGCTGAAAATGTTCGATTATTGCT
GGATGCAGACATCGGAATCAGTTTTACGGGAGTGGCAGGACCTGATACATCAGAAGGCCATTCACCAGGCACAGTCTTTA
TTGCTGTATATGATCAATCAGGAAAACAGCTGACAGAAAAATTTAATTTTCATGGTGATCGCCAGGCGATTCGAAAACGG
ACAGTTTTAAAGGGTTATGAACTTTTATTTAAATTGTTAAAATGA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(185-256)

Competence-damaged protein (CinA)

(260-412)

Probable molybdopterin binding domain (MoCF_biosynth)

(8-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0U4E3X0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

48.655

98.792

0.481
  cinA Streptococcus mitis SK321

42.518

100

0.432
  cinA Streptococcus mitis NCTC 12261

42.043

100

0.428
  cinA Streptococcus mutans UA159

41.849

99.275

0.415
  cinA Streptococcus pneumoniae TIGR4

40.618

100

0.413
  cinA Streptococcus pneumoniae Rx1

40.38

100

0.411
  cinA Streptococcus pneumoniae R6

40.38

100

0.411
  cinA Streptococcus pneumoniae D39

40.143

100

0.408

Multiple sequence alignment