Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ATM98_RS06565 Genome accession   NZ_CP013651
Coordinates   1370782..1371924 (-) Length   380 a.a.
NCBI ID   WP_061564489.1    Uniprot ID   -
Organism   Streptococcus sp. A12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1365782..1376924
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ATM98_RS06525 (ATM98_06525) - 1366277..1367524 (-) 1248 WP_048789889.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  ATM98_RS06530 (ATM98_06530) - 1367800..1368111 (-) 312 WP_006595405.1 DUF1292 domain-containing protein -
  ATM98_RS06535 (ATM98_06535) ruvX 1368129..1368548 (-) 420 WP_023027379.1 Holliday junction resolvase RuvX -
  ATM98_RS06540 (ATM98_06540) - 1368548..1368814 (-) 267 WP_006597020.1 IreB family regulatory phosphoprotein -
  ATM98_RS06545 (ATM98_06545) - 1368955..1369506 (-) 552 WP_061564487.1 hypothetical protein -
  ATM98_RS06550 (ATM98_06550) - 1369518..1370111 (-) 594 WP_061564488.1 SP0191 family lipoprotein -
  ATM98_RS06560 (ATM98_06560) spx 1370296..1370694 (-) 399 WP_006595399.1 transcriptional regulator Spx -
  ATM98_RS06565 (ATM98_06565) recA 1370782..1371924 (-) 1143 WP_061564489.1 recombinase RecA Machinery gene
  ATM98_RS06570 (ATM98_06570) cinA 1372044..1373312 (-) 1269 WP_061564490.1 competence/damage-inducible protein A Machinery gene
  ATM98_RS06575 (ATM98_06575) - 1373689..1374726 (+) 1038 WP_061564491.1 S66 peptidase family protein -
  ATM98_RS06580 (ATM98_06580) - 1374781..1375344 (-) 564 WP_061564492.1 DNA-3-methyladenine glycosylase I -
  ATM98_RS06585 (ATM98_06585) ruvA 1375354..1375947 (-) 594 WP_061564493.1 Holliday junction branch migration protein RuvA -

Sequence

Protein


Download         Length: 380 a.a.        Molecular weight: 40919.62 Da        Isoelectric Point: 4.8249

>NTDB_id=163411 ATM98_RS06565 WP_061564489.1 1370782..1371924(-) (recA) [Streptococcus sp. A12]
MAKKQKKLDDISKKFGDEREKALNDALKLIEKDFGKGSIMRLGERAEQKVQVMSSGSLALDIALGAGGYPKGRIIEIYGP
ESSGKTTVALHAVAQAQKEGGIAAFIDAEHALDPSYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVIDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLGASINKTKTIAIFINQLREKVGVMFGNPETTPGGRALKFYASVRLDVRG
NTQIKGTGDQKDTNVGKETKIKVVKNKVAPPFKEAMVEIMYGEGISRTGELLKIATDLDLIQKAGAWYSYNGEKIGQGSE
NAKKYLADHPEIFDKIDHQVRVRFGLIDDDTAVVAQDEVAESPLVEEVTLDLDDAIEIEE

Nucleotide


Download         Length: 1143 bp        

>NTDB_id=163411 ATM98_RS06565 WP_061564489.1 1370782..1371924(-) (recA) [Streptococcus sp. A12]
ATGGCGAAAAAACAGAAAAAATTAGATGATATCTCTAAGAAATTTGGAGATGAGCGTGAAAAAGCGCTTAATGATGCCCT
AAAGTTGATCGAAAAAGACTTTGGTAAAGGATCCATCATGCGTCTGGGCGAACGCGCAGAGCAAAAAGTACAAGTCATGA
GCTCTGGTTCCTTGGCGCTTGATATTGCCTTGGGTGCTGGTGGTTATCCAAAAGGTCGGATCATCGAAATCTATGGTCCA
GAATCATCAGGTAAAACAACCGTTGCCCTCCATGCAGTAGCGCAAGCACAGAAAGAAGGAGGCATTGCTGCCTTTATCGA
TGCCGAGCATGCCCTGGATCCATCTTATGCGGCAGCTCTTGGGGTTAATATTGATGAACTCCTCTTGTCTCAACCAGACT
CAGGGGAACAAGGACTAGAAATTGCTGGTAAATTGATCGACTCTGGTGCCGTTGATTTGGTCGTTATCGACTCTGTTGCT
GCCTTGGTCCCACGCGCAGAAATCGATGGAGATATCGGTGATAGCCACGTTGGTTTGCAAGCACGGATGATGAGCCAGGC
TATGCGTAAGCTTGGAGCTTCGATCAATAAGACCAAGACCATTGCTATCTTTATCAACCAATTGCGTGAAAAAGTTGGGG
TTATGTTTGGGAACCCTGAAACCACACCTGGTGGTCGTGCCCTTAAATTCTACGCTTCTGTTCGTCTAGATGTTCGTGGA
AATACCCAAATCAAGGGTACTGGGGACCAAAAAGATACTAACGTTGGTAAAGAAACCAAGATCAAGGTTGTGAAAAACAA
GGTAGCTCCACCATTCAAGGAAGCTATGGTTGAAATCATGTATGGAGAAGGAATTTCACGTACAGGCGAATTGCTGAAAA
TCGCGACAGACCTTGATTTGATTCAAAAAGCAGGTGCTTGGTATTCTTATAACGGTGAGAAGATTGGCCAAGGTTCAGAA
AATGCTAAGAAGTACTTGGCAGACCATCCAGAAATTTTTGATAAGATTGATCACCAAGTGCGCGTGCGCTTTGGCTTGAT
CGATGATGACACTGCTGTAGTTGCACAAGATGAAGTAGCTGAAAGCCCACTTGTTGAAGAAGTAACACTAGATCTTGATG
ATGCCATTGAGATTGAAGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mitis NCTC 12261

91.076

100

0.913
  recA Streptococcus mitis SK321

90.814

100

0.911
  recA Streptococcus pneumoniae Rx1

88.571

100

0.897
  recA Streptococcus pneumoniae D39

88.571

100

0.897
  recA Streptococcus pneumoniae R6

88.571

100

0.897
  recA Streptococcus pneumoniae TIGR4

88.571

100

0.897
  recA Streptococcus mutans UA159

84.755

100

0.863
  recA Streptococcus pyogenes NZ131

85.526

100

0.855
  recA Lactococcus lactis subsp. cremoris KW2

79.023

91.579

0.724
  recA Latilactobacillus sakei subsp. sakei 23K

69.277

87.368

0.605
  recA Bacillus subtilis subsp. subtilis str. 168

67.656

88.684

0.6
  recA Glaesserella parasuis strain SC1401

61.176

89.474

0.547
  recA Acinetobacter baumannii D1279779

58.571

92.105

0.539
  recA Acinetobacter baylyi ADP1

58.79

91.316

0.537
  recA Vibrio cholerae strain A1552

62.462

85.526

0.534
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.462

85.526

0.534
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.848

85

0.534
  recA Neisseria gonorrhoeae MS11

60.725

87.105

0.529
  recA Neisseria gonorrhoeae strain FA1090

60.725

87.105

0.529
  recA Neisseria gonorrhoeae MS11

60.725

87.105

0.529
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.241

87.368

0.526
  recA Ralstonia pseudosolanacearum GMI1000

59.036

87.368

0.516
  recA Pseudomonas stutzeri DSM 10701

56.851

90.263

0.513
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.402

87.105

0.5
  recA Helicobacter pylori strain NCTC11637

56.061

86.842

0.487
  recA Helicobacter pylori 26695

56.061

86.842

0.487

Multiple sequence alignment