Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   ATM98_RS06570 Genome accession   NZ_CP013651
Coordinates   1372044..1373312 (-) Length   422 a.a.
NCBI ID   WP_061564490.1    Uniprot ID   -
Organism   Streptococcus sp. A12     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1367044..1378312
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ATM98_RS06530 (ATM98_06530) - 1367800..1368111 (-) 312 WP_006595405.1 DUF1292 domain-containing protein -
  ATM98_RS06535 (ATM98_06535) ruvX 1368129..1368548 (-) 420 WP_023027379.1 Holliday junction resolvase RuvX -
  ATM98_RS06540 (ATM98_06540) - 1368548..1368814 (-) 267 WP_006597020.1 IreB family regulatory phosphoprotein -
  ATM98_RS06545 (ATM98_06545) - 1368955..1369506 (-) 552 WP_061564487.1 hypothetical protein -
  ATM98_RS06550 (ATM98_06550) - 1369518..1370111 (-) 594 WP_061564488.1 SP0191 family lipoprotein -
  ATM98_RS06560 (ATM98_06560) spx 1370296..1370694 (-) 399 WP_006595399.1 transcriptional regulator Spx -
  ATM98_RS06565 (ATM98_06565) recA 1370782..1371924 (-) 1143 WP_061564489.1 recombinase RecA Machinery gene
  ATM98_RS06570 (ATM98_06570) cinA 1372044..1373312 (-) 1269 WP_061564490.1 competence/damage-inducible protein A Machinery gene
  ATM98_RS06575 (ATM98_06575) - 1373689..1374726 (+) 1038 WP_061564491.1 S66 peptidase family protein -
  ATM98_RS06580 (ATM98_06580) - 1374781..1375344 (-) 564 WP_061564492.1 DNA-3-methyladenine glycosylase I -
  ATM98_RS06585 (ATM98_06585) ruvA 1375354..1375947 (-) 594 WP_061564493.1 Holliday junction branch migration protein RuvA -
  ATM98_RS06590 (ATM98_06590) mutL 1375968..1377917 (-) 1950 WP_061564494.1 DNA mismatch repair endonuclease MutL -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 45032.26 Da        Isoelectric Point: 4.8631

>NTDB_id=163412 ATM98_RS06570 WP_061564490.1 1372044..1373312(-) (cinA) [Streptococcus sp. A12]
MKAEIIAVGTEILTGQIVNTNAQFLSEKLASLGIDVYYHVAVGDNEGRLFSTIETASKRSDLVILCGGLGPTEDDLTKQT
LAKFLGKELVFDTTALAKLDTFFASRPDYVRTPNNERQAQLIAGSIPLQNRTGLAVGGLIEVNGVTYVVLPGPPSELKPM
VNEQLVPHLTTGEELFSRVLRFFGIGESQLVTILADIIEKQSDPTVAPYAKTGEVTLRLSTKAKDQALADAKLDVLEKEI
LSRHTLDHQPLQELFYGYGDDNSMAKVAFDLLKGTGKTITAAESLTAGLFQATLADFSGASSIFAGGFVTYSLEEKSKML
SIPAQELEQHGVVSHFTAQAMASQARKLTGSDYGVSLTGVAGPDSLEGHPAGTVFIGLATPNGVDSVQVNIAGRSRADVR
EIAVLHAFNLVRLAVLNGENLV

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=163412 ATM98_RS06570 WP_061564490.1 1372044..1373312(-) (cinA) [Streptococcus sp. A12]
ATGAAGGCGGAAATTATTGCAGTTGGAACAGAAATTCTAACAGGACAAATTGTCAACACCAATGCTCAATTCTTGTCTGA
AAAATTAGCTAGTTTAGGGATTGATGTCTATTATCATGTGGCGGTAGGAGACAATGAAGGTCGTCTCTTCTCGACCATTG
AGACGGCTTCAAAACGCAGTGATTTGGTGATTTTATGTGGTGGACTTGGGCCAACAGAGGATGATTTGACCAAGCAAACC
CTTGCTAAGTTTTTAGGGAAAGAACTGGTTTTTGATACGACAGCGCTTGCCAAACTCGACACCTTCTTTGCAAGTCGCCC
TGATTATGTCCGGACGCCCAATAATGAGCGACAAGCACAATTGATTGCCGGTTCAATCCCCCTTCAAAACCGTACAGGTC
TCGCGGTTGGAGGTTTGATTGAAGTCAATGGTGTGACCTATGTCGTTCTACCTGGTCCACCAAGTGAGTTAAAACCCATG
GTCAATGAACAATTGGTGCCTCATTTGACAACAGGGGAAGAGCTTTTTTCAAGAGTCTTGCGCTTCTTTGGGATTGGGGA
AAGCCAGCTAGTTACGATCCTAGCAGATATCATTGAAAAGCAGAGTGATCCGACGGTTGCCCCTTATGCCAAGACGGGAG
AAGTAACCTTGCGTCTATCTACAAAGGCGAAGGATCAAGCCTTAGCGGATGCTAAGCTCGATGTCTTAGAAAAGGAAATC
TTATCCCGTCATACTCTGGATCATCAACCCTTGCAAGAGTTGTTTTACGGTTATGGAGATGACAATTCGATGGCCAAGGT
TGCCTTTGATCTCTTGAAAGGGACTGGTAAGACCATTACAGCTGCAGAAAGCCTGACGGCTGGCCTGTTCCAAGCGACTT
TGGCAGATTTTTCAGGGGCGTCCAGCATCTTCGCGGGTGGTTTTGTCACCTATAGTTTGGAAGAAAAAAGCAAGATGTTG
TCTATTCCAGCTCAAGAGTTAGAGCAACATGGAGTGGTGTCTCATTTTACAGCTCAAGCCATGGCTTCACAGGCCCGTAA
GTTAACAGGATCCGATTATGGTGTTAGCCTGACCGGAGTTGCGGGGCCAGATAGTCTAGAAGGGCACCCAGCAGGGACTG
TCTTTATCGGACTTGCGACTCCAAATGGAGTGGATAGTGTCCAAGTCAATATCGCTGGACGTAGCCGGGCGGATGTCCGC
GAAATTGCAGTTCTTCATGCCTTTAATTTGGTGCGCTTGGCTGTATTAAATGGTGAAAATTTGGTATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(262-412)

Damage-inducible protein CinA KH domain (CinA_KH)

(177-243)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

74.341

98.815

0.735
  cinA Streptococcus mitis NCTC 12261

74.341

98.815

0.735
  cinA Streptococcus pneumoniae TIGR4

73.141

98.815

0.723
  cinA Streptococcus pneumoniae Rx1

73.141

98.815

0.723
  cinA Streptococcus pneumoniae R6

73.141

98.815

0.723
  cinA Streptococcus pneumoniae D39

72.902

98.815

0.72
  cinA Streptococcus mutans UA159

70.213

100

0.704
  cinA Streptococcus suis isolate S10

55.448

97.867

0.543
  cinA Bacillus subtilis subsp. subtilis str. 168

47.47

98.341

0.467

Multiple sequence alignment