Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   ATN06_RS19150 Genome accession   NZ_CP013274
Coordinates   3701809..3702840 (-) Length   343 a.a.
NCBI ID   WP_060631948.1    Uniprot ID   -
Organism   Bacillus thuringiensis strain CTC     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3696809..3707840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ATN06_RS19125 (ATN06_18895) - 3697260..3698183 (-) 924 WP_060631945.1 dipeptidase -
  ATN06_RS19130 (ATN06_18900) spoVS 3698242..3698502 (-) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  ATN06_RS19135 (ATN06_18905) - 3698652..3699446 (-) 795 WP_060631946.1 TIGR00282 family metallophosphoesterase -
  ATN06_RS19140 (ATN06_18910) rny 3699765..3701327 (-) 1563 WP_000204911.1 ribonuclease Y -
  ATN06_RS19150 (ATN06_18920) recA 3701809..3702840 (-) 1032 WP_060631948.1 recombinase RecA Machinery gene
  ATN06_RS19155 (ATN06_18925) cinA 3702985..3704223 (-) 1239 WP_060631949.1 competence/damage-inducible protein CinA Machinery gene
  ATN06_RS19160 (ATN06_18930) pgsA 3704244..3704822 (-) 579 WP_060631950.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  ATN06_RS19165 (ATN06_18935) - 3704886..3705797 (-) 912 WP_060631951.1 helix-turn-helix domain-containing protein -
  ATN06_RS19170 (ATN06_18940) - 3705819..3706604 (-) 786 WP_000574107.1 DUF3388 domain-containing protein -
  ATN06_RS19175 (ATN06_18945) - 3706744..3706992 (-) 249 WP_000114455.1 DUF3243 domain-containing protein -
  ATN06_RS19180 (ATN06_18950) ymfI 3707070..3707783 (-) 714 WP_060631952.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 37328.25 Da        Isoelectric Point: 4.9057

>NTDB_id=161284 ATN06_RS19150 WP_060631948.1 3701809..3702840(-) (recA) [Bacillus thuringiensis strain CTC]
MSDRQAALDMALKQIEKQFGKGSIMKLGEQAERRVSTISSGSLALDVALGVGGYPRGRIIEIYGPESSGKTTVSLHAIAE
VQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPDTGEQGLEIAEALVRSGAVDIIVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKT
KVKVVKNKVAPPFRVAEVDIMYGEGISREGEILDMASELDIVQKSGAWYSYNEERLGQGRENSKQFLKENTDLREEIAFF
VRDHHGIGEDSGVEDTEDSTLQD

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=161284 ATN06_RS19150 WP_060631948.1 3701809..3702840(-) (recA) [Bacillus thuringiensis strain CTC]
ATGAGTGATCGTCAAGCGGCATTAGATATGGCGTTAAAACAAATAGAGAAGCAATTCGGTAAAGGTTCAATTATGAAATT
AGGAGAACAAGCGGAGCGTAGAGTTTCTACAATTTCAAGTGGTTCTTTAGCACTTGATGTGGCACTAGGGGTAGGCGGAT
ACCCACGTGGTCGTATTATTGAAATTTACGGACCTGAAAGTTCAGGTAAAACAACAGTTTCATTACACGCAATCGCTGAA
GTACAGCGTCAAGGTGGACAAGCAGCGTTCATTGATGCGGAGCATGCGATGGATCCTGTCTATGCACAAAAATTAGGCGT
TAACATAGATGAATTACTATTATCACAGCCTGATACAGGGGAGCAAGGTTTAGAAATCGCAGAAGCTCTTGTACGAAGTG
GTGCGGTTGATATTATTGTAATTGACTCTGTAGCAGCTCTTGTACCGAAAGCGGAGATCGAAGGAGACATGGGTGACTCA
CACGTAGGTTTACAAGCTCGTTTAATGTCTCAAGCACTTCGTAAACTTTCAGGTGCAATCAATAAATCAAAAACAATCGC
AATCTTTATTAACCAAATTCGTGAAAAAGTTGGGGTTATGTTCGGAAACCCAGAAACAACTCCAGGTGGTCGTGCGCTGA
AATTCTATTCAACTGTCCGTCTTGAAGTACGTCGTGCGGAGCAATTAAAGCAAGGTAACGACATCGTTGGTAATAAAACG
AAAGTAAAAGTAGTTAAGAATAAAGTGGCACCACCATTCCGTGTTGCTGAAGTTGATATTATGTACGGAGAAGGTATTTC
AAGAGAAGGTGAAATCTTAGATATGGCTTCTGAACTTGATATCGTTCAAAAGAGTGGTGCTTGGTACTCTTATAATGAAG
AGCGTTTAGGGCAAGGTCGTGAAAATTCGAAGCAATTCTTAAAAGAGAATACGGATTTAAGAGAGGAAATTGCCTTCTTT
GTTCGTGATCATCACGGAATTGGTGAAGATTCTGGTGTGGAAGACACGGAAGATTCAACTCTTCAAGATTAA

Domains

Predicted by InterProScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

86.186

97.085

0.837
  recA Latilactobacillus sakei subsp. sakei 23K

76.453

95.335

0.729
  recA Streptococcus pneumoniae D39

68.513

100

0.685
  recA Streptococcus pneumoniae Rx1

68.513

100

0.685
  recA Streptococcus pneumoniae R6

68.513

100

0.685
  recA Streptococcus pneumoniae TIGR4

68.513

100

0.685
  recA Streptococcus pyogenes NZ131

70.427

95.627

0.673
  recA Streptococcus mutans UA159

67.742

99.417

0.673
  recA Streptococcus mitis SK321

69.697

96.21

0.671
  recA Streptococcus mitis NCTC 12261

69.697

96.21

0.671
  recA Lactococcus lactis subsp. cremoris KW2

67.56

97.959

0.662
  recA Neisseria gonorrhoeae strain FA1090

64.307

98.834

0.636
  recA Neisseria gonorrhoeae MS11

64.307

98.834

0.636
  recA Neisseria gonorrhoeae MS11

64.307

98.834

0.636
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.501

98.251

0.624
  recA Ralstonia pseudosolanacearum GMI1000

68.051

91.254

0.621
  recA Acinetobacter baumannii D1279779

60.526

99.708

0.603
  recA Helicobacter pylori 26695

62.006

95.918

0.595
  recA Helicobacter pylori strain NCTC11637

62.006

95.918

0.595
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.08

95.335

0.592
  recA Vibrio cholerae strain A1552

65.273

90.671

0.592
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.273

90.671

0.592
  recA Glaesserella parasuis strain SC1401

63.125

93.294

0.589
  recA Acinetobacter baylyi ADP1

62.112

93.878

0.583
  recA Pseudomonas stutzeri DSM 10701

61.875

93.294

0.577
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.076

92.128

0.563

Multiple sequence alignment