Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR/comR2   Type   Regulator
Locus tag   RN86_RS05280 Genome accession   NZ_CP012648
Coordinates   1080407..1080889 (+) Length   160 a.a.
NCBI ID   WP_048778891.1    Uniprot ID   A0AB35FPE6
Organism   Streptococcus gordonii strain KCOM 1506 (= ChDC B679)     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1075407..1085889
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RN86_RS05260 (RN86_05255) amiC 1075775..1077271 (+) 1497 WP_048777855.1 ABC transporter permease Regulator
  RN86_RS05265 (RN86_05260) amiD 1077271..1078197 (+) 927 WP_008809623.1 oligopeptide ABC transporter permease OppC Regulator
  RN86_RS05270 (RN86_05265) amiE 1078206..1079273 (+) 1068 WP_008809622.1 ABC transporter ATP-binding protein Regulator
  RN86_RS05275 (RN86_05270) amiF 1079284..1080207 (+) 924 WP_012130756.1 ATP-binding cassette domain-containing protein Regulator
  RN86_RS05280 (RN86_05275) comR/comR2 1080407..1080889 (+) 483 WP_048778891.1 sigma-70 family RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 19930.88 Da        Isoelectric Point: 9.6143

>NTDB_id=156093 RN86_RS05280 WP_048778891.1 1080407..1080889(+) (comR/comR2) [Streptococcus gordonii strain KCOM 1506 (= ChDC B679)]
MKFEDVYKQVEGIVKRCYKDYYLHLWEYADWRQEGMLVLYELLKSHPNLLEDHPRLYRYFKTKFRNRIHDLIRRQESQKR
KLDRQPYEEVSEIGHRLRMKELYLDELVAFRSAMAEYRSQLSPEESKQYERLMADERFKGRKAMLKNLSYHLRDFNPRLD

Nucleotide


Download         Length: 483 bp        

>NTDB_id=156093 RN86_RS05280 WP_048778891.1 1080407..1080889(+) (comR/comR2) [Streptococcus gordonii strain KCOM 1506 (= ChDC B679)]
ATGAAGTTTGAGGACGTATACAAACAAGTTGAAGGGATAGTCAAGCGCTGTTATAAAGATTATTATCTGCACTTATGGGA
GTATGCAGATTGGAGGCAGGAAGGAATGTTGGTGTTGTACGAATTATTAAAAAGTCATCCCAACCTACTGGAAGATCATC
CACGCCTGTACCGTTACTTCAAGACCAAGTTTCGGAACAGAATTCATGATTTGATTCGTCGCCAAGAGAGTCAAAAGCGG
AAATTGGACAGGCAACCCTATGAAGAGGTCAGCGAGATAGGTCATCGTTTAAGAATGAAAGAGCTGTATCTGGATGAATT
GGTAGCCTTTAGAAGTGCAATGGCAGAGTATAGAAGTCAGCTCAGTCCAGAAGAATCAAAACAATATGAGCGTCTGATGG
CAGATGAAAGGTTCAAAGGACGTAAGGCAATGCTCAAAAATCTATCCTATCACTTAAGGGATTTCAATCCCCGTTTAGAT
TAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR/comR2 Streptococcus gordonii str. Challis substr. CH1

96.875

100

0.969
  comR/comR1 Streptococcus gordonii str. Challis substr. CH1

96.875

100

0.969
  comX/sigX/comX1/sigX1 Streptococcus mitis SK321

49.359

97.5

0.481
  comX/sigX/comX2/sigX2 Streptococcus mitis NCTC 12261

48.718

97.5

0.475
  comX/sigX/comX2/sigX2 Streptococcus mitis SK321

48.718

97.5

0.475
  comX/comX1 Streptococcus pneumoniae Rx1

48.077

97.5

0.469
  comX/comX2 Streptococcus pneumoniae D39

48.077

97.5

0.469
  comX/comX1 Streptococcus pneumoniae D39

48.077

97.5

0.469
  comX/comX2 Streptococcus pneumoniae R6

48.077

97.5

0.469
  comX/comX1 Streptococcus pneumoniae R6

48.077

97.5

0.469
  comX/comX1 Streptococcus pneumoniae TIGR4

48.077

97.5

0.469
  comX/comX2 Streptococcus pneumoniae Rx1

48.077

97.5

0.469
  comX/comX2 Streptococcus pneumoniae TIGR4

48.077

97.5

0.469
  comX/sigX/comX1/sigX1 Streptococcus mitis NCTC 12261

47.436

97.5

0.463
  comX/sigX Streptococcus suis P1/7

47.742

96.875

0.463
  comX/sigX Streptococcus suis D9

47.742

96.875

0.463
  comX/sigX Streptococcus suis isolate S10

47.742

96.875

0.463
  comX/sigX Streptococcus mutans UA159

46.795

97.5

0.456
  comX Streptococcus thermophilus LMG 18311

43.871

96.875

0.425
  comX Streptococcus thermophilus LMD-9

43.871

96.875

0.425
  comX/sigX Streptococcus salivarius strain HSISS4

43.226

96.875

0.419
  comX Streptococcus salivarius SK126

43.226

96.875

0.419
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS315

42.208

96.25

0.406
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS315

42.208

96.25

0.406
  comX/sigX Streptococcus infantarius subsp. infantarius ATCC BAA-102

40.506

98.75

0.4
  comX/sigX/comX1/sigX1 Streptococcus pyogenes MGAS8232

41.558

96.25

0.4
  comX/sigX/comX2/sigX2 Streptococcus pyogenes JRS4

41.558

96.25

0.4
  comX/sigX/comX2/sigX2 Streptococcus pyogenes MGAS8232

41.558

96.25

0.4
  comX Streptococcus sobrinus strain NIDR 6715-7

41.558

96.25

0.4
  comX/sigX/comX1/sigX1 Streptococcus pyogenes JRS4

41.558

96.25

0.4

Multiple sequence alignment