Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   RN86_RS05275 Genome accession   NZ_CP012648
Coordinates   1079284..1080207 (+) Length   307 a.a.
NCBI ID   WP_012130756.1    Uniprot ID   A0AAQ2V108
Organism   Streptococcus gordonii strain KCOM 1506 (= ChDC B679)     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1074284..1085207
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RN86_RS05260 (RN86_05255) amiC 1075775..1077271 (+) 1497 WP_048777855.1 ABC transporter permease Regulator
  RN86_RS05265 (RN86_05260) amiD 1077271..1078197 (+) 927 WP_008809623.1 oligopeptide ABC transporter permease OppC Regulator
  RN86_RS05270 (RN86_05265) amiE 1078206..1079273 (+) 1068 WP_008809622.1 ABC transporter ATP-binding protein Regulator
  RN86_RS05275 (RN86_05270) amiF 1079284..1080207 (+) 924 WP_012130756.1 ATP-binding cassette domain-containing protein Regulator
  RN86_RS05280 (RN86_05275) comR/comR2 1080407..1080889 (+) 483 WP_048778891.1 sigma-70 family RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 307 a.a.        Molecular weight: 34922.14 Da        Isoelectric Point: 6.7109

>NTDB_id=156092 RN86_RS05275 WP_012130756.1 1079284..1080207(+) (amiF) [Streptococcus gordonii strain KCOM 1506 (= ChDC B679)]
MSEKLVEVKDLEISFGEGKKKFVAVKNANFFINRGETFSLVGESGSGKTTIGRAIIGLNETSKGEIFFDGKQINGKKSRK
ESSEIIRKIQMIFQDPAASLNERATVDYIISEGLYNYHLFENEEERIQKVKNIIHEVGLLSEHLTRYPHEFSGGQRQRIG
IARALVMQPDFVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPIHPYTKSLLSAVPIPDPILERKKVLKVYDPDQHDYSVEKPEMVEIKPGHFVWANKTEVENYKKEL

Nucleotide


Download         Length: 924 bp        

>NTDB_id=156092 RN86_RS05275 WP_012130756.1 1079284..1080207(+) (amiF) [Streptococcus gordonii strain KCOM 1506 (= ChDC B679)]
ATGTCTGAAAAATTAGTAGAAGTTAAAGATTTGGAGATTTCCTTTGGTGAAGGGAAGAAGAAATTTGTAGCTGTTAAAAA
TGCAAATTTCTTTATTAATAGAGGAGAAACTTTCTCACTCGTAGGTGAATCCGGCTCAGGGAAAACTACAATCGGTCGCG
CAATCATTGGTTTGAATGAGACGAGTAAAGGTGAAATCTTCTTTGATGGAAAGCAGATTAATGGGAAGAAGTCTAGAAAA
GAATCTTCGGAAATTATTCGTAAGATTCAAATGATATTCCAGGATCCTGCTGCGAGCTTAAACGAGCGTGCAACAGTTGA
CTATATCATTTCTGAGGGCTTGTACAACTATCACTTGTTTGAAAATGAAGAAGAAAGAATACAAAAGGTTAAAAATATTA
TTCATGAAGTTGGATTGCTTTCCGAACATTTGACGCGTTATCCGCATGAATTCTCAGGAGGACAACGTCAACGTATTGGG
ATAGCGCGCGCTTTAGTCATGCAACCAGATTTCGTTATTGCTGATGAACCAATTTCTGCTTTGGATGTATCCGTTCGTGC
TCAAGTCCTAAACCTTCTAAAGAAATTCCAAAAAGAGTTGGGGTTAACCTATCTATTCATCGCTCACGATTTGTCAGTGG
TACGCTTCATTTCGGATCGTATCGCAGTTATCTATAAAGGTGTTATTGTTGAAGTTGCTGAAACAGAAGAGCTCTTTAAC
AATCCAATTCATCCTTATACCAAATCGTTATTATCAGCTGTTCCAATTCCAGATCCAATCTTAGAACGTAAAAAAGTACT
TAAAGTCTACGATCCGGATCAACATGACTATTCAGTTGAAAAACCTGAAATGGTTGAAATTAAACCTGGCCACTTTGTTT
GGGCTAACAAAACTGAAGTAGAGAACTATAAAAAAGAACTCTAA

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)

ABC transporter (ABC_tran)

(25-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

86.601

99.674

0.863
  amiF Streptococcus thermophilus LMD-9

86.275

99.674

0.86
  amiF Streptococcus salivarius strain HSISS4

85.621

99.674

0.853

Multiple sequence alignment