Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   RN86_RS05260 Genome accession   NZ_CP012648
Coordinates   1075775..1077271 (+) Length   498 a.a.
NCBI ID   WP_048777855.1    Uniprot ID   -
Organism   Streptococcus gordonii strain KCOM 1506 (= ChDC B679)     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1070775..1082271
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RN86_RS05250 (RN86_05245) amiA 1071460..1073442 (+) 1983 WP_053794410.1 peptide ABC transporter substrate-binding protein Regulator
  RN86_RS05255 (RN86_05250) amiA 1073719..1075710 (+) 1992 WP_053794411.1 peptide ABC transporter substrate-binding protein Regulator
  RN86_RS05260 (RN86_05255) amiC 1075775..1077271 (+) 1497 WP_048777855.1 ABC transporter permease Regulator
  RN86_RS05265 (RN86_05260) amiD 1077271..1078197 (+) 927 WP_008809623.1 oligopeptide ABC transporter permease OppC Regulator
  RN86_RS05270 (RN86_05265) amiE 1078206..1079273 (+) 1068 WP_008809622.1 ABC transporter ATP-binding protein Regulator
  RN86_RS05275 (RN86_05270) amiF 1079284..1080207 (+) 924 WP_012130756.1 ATP-binding cassette domain-containing protein Regulator
  RN86_RS05280 (RN86_05275) comR/comR2 1080407..1080889 (+) 483 WP_048778891.1 sigma-70 family RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 55579.59 Da        Isoelectric Point: 9.9197

>NTDB_id=156089 RN86_RS05260 WP_048777855.1 1075775..1077271(+) (amiC) [Streptococcus gordonii strain KCOM 1506 (= ChDC B679)]
MKKYIFMRILRSLVSIFLVTALTYTIIYTMVPRKLIFKQDPNYNKIATTKDKKANYENTIYERMGYVDYYDTKELQEKAS
KEDSSVTVEGTDANKKIYEAYIKKLGNGWKLHQFEESKQFYAVREVPVLERVLGFYGNLIQFDHTGFVKDETNPKLKRYI
RIENDPAIGWSVVGSGTKHKYLLYFNAQFPFVHQNFVTLNLGNSYPTYANIPVLQVISQGQGQTKSSEVQFPTGKKISSV
NIYSRTYKSPSKADSRDIANYGKDDPYTATESNYQYPSMLVSSAIIGLIGIAISYLIAVPLGSYMARFKNTWIDSSLTGL
LTFLLALPTIALVYIIRLGGSSVGLPDSFPVLGAGDWRSYVLPAVILGLLGAPSTAIWIRRYMIDLQSQDFVRFARAKGL
SEKEISNKHIFKNAMVPLVSGIPGAVIGVIQGATLTETVFAFPGMGKMLIDSVKASNNSMVVGLVFIFTGLSVFALLLGD
ILMTMLDPRIKLTTKGGK

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=156089 RN86_RS05260 WP_048777855.1 1075775..1077271(+) (amiC) [Streptococcus gordonii strain KCOM 1506 (= ChDC B679)]
ATGAAGAAATATATATTTATGCGTATCTTACGCTCCCTGGTGTCGATTTTCTTAGTAACGGCTTTGACCTATACCATTAT
TTATACAATGGTGCCAAGAAAATTGATTTTTAAACAGGATCCTAACTATAACAAGATAGCAACCACAAAAGATAAAAAAG
CTAATTACGAGAACACAATCTATGAACGTATGGGCTATGTGGATTATTATGATACGAAAGAGTTACAGGAGAAAGCTAGC
AAGGAAGATAGCTCTGTAACTGTTGAAGGAACTGATGCAAACAAAAAAATCTACGAAGCTTATATCAAAAAATTAGGTAA
TGGCTGGAAGCTTCACCAATTTGAAGAAAGCAAGCAATTTTATGCTGTTCGTGAGGTGCCAGTTCTAGAACGTGTTCTTG
GCTTCTACGGGAATTTGATTCAATTTGACCATACTGGTTTTGTCAAAGATGAAACAAATCCAAAACTTAAACGTTATATT
CGTATTGAAAACGACCCTGCTATTGGTTGGTCTGTAGTTGGATCAGGGACTAAGCATAAATATTTACTATACTTTAATGC
TCAATTCCCGTTTGTTCATCAAAATTTTGTGACCTTGAACTTAGGAAATTCTTACCCAACTTATGCAAATATTCCTGTGT
TACAGGTTATTTCACAAGGACAAGGACAAACTAAATCATCTGAAGTTCAATTCCCTACAGGAAAGAAAATTTCATCAGTT
AATATCTATTCACGAACTTACAAGTCACCAAGTAAAGCTGATTCGCGAGATATTGCAAACTATGGAAAAGACGATCCATA
TACAGCTACAGAGAGCAACTATCAATATCCATCCATGCTTGTTAGCTCAGCGATTATTGGTTTGATTGGTATTGCGATCT
CTTATCTGATTGCTGTCCCATTAGGGTCTTACATGGCTCGCTTCAAAAACACTTGGATTGATAGTTCATTAACGGGTCTC
TTGACCTTCCTTTTGGCCCTGCCAACAATTGCCTTGGTTTATATTATTCGCTTAGGTGGTTCTTCGGTTGGTCTTCCAGA
TTCTTTCCCAGTTCTTGGTGCAGGAGACTGGCGTTCATATGTTCTTCCGGCAGTAATTCTGGGACTTTTGGGTGCGCCAA
GCACAGCTATCTGGATTCGCCGTTATATGATTGACTTGCAATCCCAAGACTTTGTACGTTTTGCTCGTGCTAAAGGATTA
TCTGAAAAAGAAATTTCAAATAAACACATTTTTAAAAATGCCATGGTTCCATTGGTATCAGGAATTCCAGGAGCCGTTAT
TGGTGTTATTCAAGGGGCAACCTTGACAGAGACTGTCTTCGCTTTCCCTGGTATGGGTAAAATGTTGATCGACTCAGTTA
AAGCTTCAAATAATTCTATGGTAGTCGGCTTGGTCTTCATTTTCACTGGTTTATCAGTCTTTGCCTTACTCTTAGGTGAT
ATTTTGATGACAATGCTTGACCCACGTATTAAATTAACAACAAAAGGAGGTAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(298-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

79.116

100

0.791
  amiC Streptococcus thermophilus LMG 18311

78.715

100

0.787
  amiC Streptococcus thermophilus LMD-9

78.514

100

0.785

Multiple sequence alignment