Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   RN86_RS05255 Genome accession   NZ_CP012648
Coordinates   1073719..1075710 (+) Length   663 a.a.
NCBI ID   WP_053794411.1    Uniprot ID   -
Organism   Streptococcus gordonii strain KCOM 1506 (= ChDC B679)     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1068719..1080710
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RN86_RS05245 (RN86_05240) amiA3 1069252..1071210 (+) 1959 WP_053794409.1 peptide ABC transporter substrate-binding protein Regulator
  RN86_RS05250 (RN86_05245) amiA 1071460..1073442 (+) 1983 WP_053794410.1 peptide ABC transporter substrate-binding protein Regulator
  RN86_RS05255 (RN86_05250) amiA 1073719..1075710 (+) 1992 WP_053794411.1 peptide ABC transporter substrate-binding protein Regulator
  RN86_RS05260 (RN86_05255) amiC 1075775..1077271 (+) 1497 WP_048777855.1 ABC transporter permease Regulator
  RN86_RS05265 (RN86_05260) amiD 1077271..1078197 (+) 927 WP_008809623.1 oligopeptide ABC transporter permease OppC Regulator
  RN86_RS05270 (RN86_05265) amiE 1078206..1079273 (+) 1068 WP_008809622.1 ABC transporter ATP-binding protein Regulator
  RN86_RS05275 (RN86_05270) amiF 1079284..1080207 (+) 924 WP_012130756.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 663 a.a.        Molecular weight: 73342.82 Da        Isoelectric Point: 5.0848

>NTDB_id=156088 RN86_RS05255 WP_053794411.1 1073719..1075710(+) (amiA) [Streptococcus gordonii strain KCOM 1506 (= ChDC B679)]
MKKGKILTLAGVALLATGVLAACSNSTSNSSNSSSSGADQAFNYIYEVDPENLNYLISSKAATTDLTANLIDGLLENDNY
GNLVPSMAEDWTVSKDGLTYTYKLRKDAKWYTSDGEEYADVKAQDFVAGLKYAADNKSETLYLVQSSIKGLDDYVNGKTK
DFSSVGVKAVDDRTVQYTLNEPESFWNSKTTMGILYPVNEEFLKSKGDKFAQAADPTSLLYNGPFLLKSITSKSSIEFAK
NPNYWDKDNVHVSDVKLTYFDGQDQGKPAEQFAKGALSAARLAPTSATFSKVEKEFKDNIVYTPQDSSSFLVGVNIDRQT
YNHTAKSSDAQKASTKKALMNKDFRQALSFAFDRTAYASQVNGKEGATKMLRNLYIPPTFVQADGKSFGELVKEKVASYG
DEWKDVNFDDAQDGLYNKEKAKAEFAKAKKALQEEGVEFPIHLDMPVDQTATAKVQRVQSLKQSIESSLGTDNVVVDIHQ
MKTDDVLNITYYAASAAEEDWDISDNVGWSPDYQDPSTYLEIIKPGGENTKTFLGFDGKENAAADQVGLKEYAKLVDEAA
AEKTDVNKRYEKYAAAQAWLTDSALLIPTTSRTGRPVLTKIVPFTAPFAWSGAKGRDMASYKYLKLQDKAVTAKEYQKAQ
EKWNKERAESNKKAQEELEKHVK

Nucleotide


Download         Length: 1992 bp        

>NTDB_id=156088 RN86_RS05255 WP_053794411.1 1073719..1075710(+) (amiA) [Streptococcus gordonii strain KCOM 1506 (= ChDC B679)]
ATGAAGAAAGGTAAAATCCTTACACTTGCGGGAGTTGCTCTCTTGGCTACTGGCGTTCTTGCAGCGTGCTCAAATTCTAC
ATCAAACTCATCAAACTCATCAAGCTCTGGCGCAGATCAAGCTTTTAACTATATCTACGAAGTTGATCCAGAAAACTTGA
ATTATTTGATCTCTAGTAAAGCAGCAACAACTGACCTTACAGCTAACTTGATTGATGGTCTTTTGGAAAATGACAACTAT
GGAAACTTGGTTCCATCGATGGCTGAAGATTGGACAGTGTCTAAGGATGGCTTGACTTATACTTATAAACTTCGTAAGGA
TGCTAAATGGTATACTTCTGATGGTGAAGAATATGCTGATGTCAAGGCCCAAGACTTTGTGGCAGGTCTAAAGTACGCTG
CTGACAACAAGTCTGAAACTCTTTATCTTGTTCAAAGTTCTATCAAGGGCTTGGATGACTACGTTAATGGTAAAACAAAG
GATTTCTCATCAGTTGGTGTTAAAGCAGTTGATGACCGCACAGTTCAATATACTTTAAATGAGCCAGAAAGTTTTTGGAA
CTCTAAAACAACGATGGGTATCCTTTATCCAGTCAATGAAGAGTTCTTGAAGTCTAAAGGTGACAAGTTTGCTCAAGCTG
CTGACCCAACTAGTCTTCTATACAACGGGCCATTCCTACTTAAATCTATCACATCTAAATCATCTATTGAATTTGCTAAA
AATCCAAATTATTGGGATAAAGATAATGTCCATGTGAGCGATGTTAAATTAACGTACTTTGACGGGCAAGATCAAGGTAA
ACCAGCTGAGCAATTTGCTAAAGGTGCTCTCAGTGCGGCTAGACTGGCTCCTACAAGTGCTACCTTCTCCAAAGTAGAAA
AAGAATTCAAAGATAATATCGTTTATACTCCTCAAGATTCTTCAAGCTTTTTAGTTGGGGTGAACATTGATCGTCAAACA
TACAATCACACAGCTAAGTCAAGTGATGCACAAAAAGCATCAACAAAGAAAGCTTTGATGAACAAAGATTTCCGTCAAGC
CTTGAGTTTTGCATTCGACAGAACTGCTTATGCTTCACAAGTTAATGGTAAAGAAGGGGCTACGAAAATGCTCCGCAATC
TCTACATTCCACCTACTTTTGTTCAGGCAGATGGTAAGAGCTTCGGTGAACTTGTGAAAGAAAAAGTGGCTAGCTATGGA
GATGAGTGGAAAGATGTAAACTTCGACGATGCTCAAGATGGTCTTTACAATAAAGAAAAAGCTAAAGCTGAATTTGCGAA
AGCTAAAAAAGCTCTCCAAGAAGAAGGTGTAGAATTCCCTATTCATTTGGATATGCCAGTAGACCAAACTGCTACTGCTA
AAGTTCAGCGTGTTCAATCTTTGAAACAATCAATTGAGAGCTCGCTTGGGACAGACAATGTGGTTGTTGACATTCATCAA
ATGAAGACTGATGATGTTTTGAACATCACATATTATGCTGCTTCAGCTGCTGAAGAAGACTGGGATATTTCTGATAATGT
TGGTTGGTCTCCTGACTATCAAGATCCATCAACTTATCTTGAAATTATCAAGCCTGGCGGTGAAAATACCAAGACATTCT
TAGGCTTTGATGGTAAAGAAAATGCAGCTGCAGACCAAGTTGGTTTGAAGGAGTATGCTAAGCTAGTTGATGAAGCTGCC
GCTGAAAAGACAGATGTAAATAAACGCTATGAAAAATATGCAGCTGCTCAAGCATGGCTAACAGATAGCGCCTTGTTGAT
ACCAACAACAAGTAGAACTGGACGTCCAGTTTTAACTAAGATTGTACCATTTACAGCTCCTTTTGCTTGGTCTGGTGCTA
AAGGTCGTGACATGGCAAGTTACAAATATCTGAAATTACAAGATAAAGCTGTCACAGCCAAAGAATATCAGAAAGCTCAA
GAAAAATGGAATAAAGAACGTGCAGAATCTAATAAAAAAGCACAAGAAGAGTTAGAAAAACACGTGAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(83-526)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

60.301

100

0.605
  amiA3 Streptococcus thermophilus LMD-9

59.398

100

0.596
  amiA3 Streptococcus thermophilus LMG 18311

58.947

100

0.591

Multiple sequence alignment