Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   RN86_RS05265 Genome accession   NZ_CP012648
Coordinates   1077271..1078197 (+) Length   308 a.a.
NCBI ID   WP_008809623.1    Uniprot ID   -
Organism   Streptococcus gordonii strain KCOM 1506 (= ChDC B679)     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1072271..1083197
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RN86_RS05255 (RN86_05250) amiA 1073719..1075710 (+) 1992 WP_053794411.1 peptide ABC transporter substrate-binding protein Regulator
  RN86_RS05260 (RN86_05255) amiC 1075775..1077271 (+) 1497 WP_048777855.1 ABC transporter permease Regulator
  RN86_RS05265 (RN86_05260) amiD 1077271..1078197 (+) 927 WP_008809623.1 oligopeptide ABC transporter permease OppC Regulator
  RN86_RS05270 (RN86_05265) amiE 1078206..1079273 (+) 1068 WP_008809622.1 ABC transporter ATP-binding protein Regulator
  RN86_RS05275 (RN86_05270) amiF 1079284..1080207 (+) 924 WP_012130756.1 ATP-binding cassette domain-containing protein Regulator
  RN86_RS05280 (RN86_05275) comR/comR2 1080407..1080889 (+) 483 WP_048778891.1 sigma-70 family RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34645.61 Da        Isoelectric Point: 9.7223

>NTDB_id=156090 RN86_RS05265 WP_008809623.1 1077271..1078197(+) (amiD) [Streptococcus gordonii strain KCOM 1506 (= ChDC B679)]
MASIDKNKFQFVKRDDFASEAIDAPAYSYWRSVIRQFLKKKSTIIMLAILLTIILMSFIYPMLSDFDYNDVSKVNDFSAR
YIAPNGKYWFGTDSNGKSLFDGVWFGARNSILISVIATAINLIIGIVVGGIWGISKSVDRVMMEVYNVISNIPQLLIVIV
LTYSIGAGFWNLIFAMTITSWISIAYLIRVQIMRYRDLEYNLASRTLGTSTFKIVARNIMPQLVSVIMTTSSQMLPSFIS
YEAFLSFFGLGLPVTVPSLGRLISDYSQNVTTNAYLFWIPLTTLILVSLSLFIVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=156090 RN86_RS05265 WP_008809623.1 1077271..1078197(+) (amiD) [Streptococcus gordonii strain KCOM 1506 (= ChDC B679)]
ATGGCTTCTATTGATAAAAATAAATTCCAATTTGTCAAACGCGATGATTTTGCCTCTGAAGCAATTGATGCTCCAGCTTA
TTCGTATTGGAGATCTGTTATTCGCCAATTTCTGAAGAAGAAATCTACCATTATTATGTTGGCGATTTTGCTAACCATTA
TTTTAATGAGTTTTATTTACCCGATGTTGTCTGATTTTGATTATAACGATGTAAGTAAAGTTAATGATTTTAGTGCTCGT
TATATTGCGCCAAATGGAAAATATTGGTTTGGTACAGATAGCAATGGTAAATCTCTCTTTGATGGAGTGTGGTTTGGTGC
TCGTAATTCTATCTTGATTTCCGTTATTGCGACAGCCATTAACTTGATCATTGGGATTGTTGTTGGTGGTATTTGGGGGA
TTTCCAAATCAGTTGACCGTGTTATGATGGAAGTCTATAACGTTATCTCAAATATTCCGCAATTGTTGATCGTTATTGTT
TTGACTTATTCAATCGGGGCCGGATTCTGGAATCTAATCTTTGCCATGACAATTACTTCATGGATTTCGATTGCTTACTT
AATTCGTGTACAAATCATGCGGTACCGTGATTTAGAGTACAACCTTGCCAGCCGTACTTTGGGAACGTCTACTTTTAAAA
TTGTTGCTCGAAACATTATGCCACAATTGGTATCTGTTATCATGACGACTAGCTCTCAAATGCTGCCAAGCTTTATCTCT
TATGAAGCCTTCCTTTCTTTCTTTGGTTTGGGGCTTCCAGTCACTGTGCCAAGTTTAGGGCGTTTGATTTCTGACTATTC
ACAAAACGTTACAACTAATGCTTACCTTTTCTGGATTCCATTGACAACCTTGATTTTGGTATCCTTGTCCCTTTTCATCG
TCGGACAAAATTTAGCGGATGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(125-306)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

82.143

100

0.821
  amiD Streptococcus thermophilus LMG 18311

81.169

100

0.812
  amiD Streptococcus thermophilus LMD-9

81.169

100

0.812

Multiple sequence alignment