Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   RN86_RS05270 Genome accession   NZ_CP012648
Coordinates   1078206..1079273 (+) Length   355 a.a.
NCBI ID   WP_008809622.1    Uniprot ID   A0A0F2CNN2
Organism   Streptococcus gordonii strain KCOM 1506 (= ChDC B679)     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1073206..1084273
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RN86_RS05255 (RN86_05250) amiA 1073719..1075710 (+) 1992 WP_053794411.1 peptide ABC transporter substrate-binding protein Regulator
  RN86_RS05260 (RN86_05255) amiC 1075775..1077271 (+) 1497 WP_048777855.1 ABC transporter permease Regulator
  RN86_RS05265 (RN86_05260) amiD 1077271..1078197 (+) 927 WP_008809623.1 oligopeptide ABC transporter permease OppC Regulator
  RN86_RS05270 (RN86_05265) amiE 1078206..1079273 (+) 1068 WP_008809622.1 ABC transporter ATP-binding protein Regulator
  RN86_RS05275 (RN86_05270) amiF 1079284..1080207 (+) 924 WP_012130756.1 ATP-binding cassette domain-containing protein Regulator
  RN86_RS05280 (RN86_05275) comR/comR2 1080407..1080889 (+) 483 WP_048778891.1 sigma-70 family RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 39824.61 Da        Isoelectric Point: 4.8872

>NTDB_id=156091 RN86_RS05270 WP_008809622.1 1078206..1079273(+) (amiE) [Streptococcus gordonii strain KCOM 1506 (= ChDC B679)]
MIQNKNVILTARDIVVEFDVRDKVLTAIRGVSLDLVEGEVLALVGESGSGKSVLTKTFTGMLEDNGRVAQGVINYRGQDL
TTLKSNKDWEKIRGAKIATIFQDPMTSLDPINTIGSQITEVIIKHQGKDAKEAKEMAIDYMKKVGIPDAERRFEEYPFQY
SGGMRQRIVIAIALACRPDILICDEPTTALDVTIQAQIIELLKSLQNEYRFTTIFITHDLGVVASIADKVAVMYAGEIVE
YGTVEEIFYDPRHPYTWSLLSSLPQLANDHGELFSIPGTPPSLYTELKGDAFALRSDYAMQIDFEEKAPQFQVTETHWAK
TWLLHEDAPKVHKPEIIENLHDKIRLNMGFAHLEG

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=156091 RN86_RS05270 WP_008809622.1 1078206..1079273(+) (amiE) [Streptococcus gordonii strain KCOM 1506 (= ChDC B679)]
ATGATACAAAATAAAAATGTAATATTGACTGCTCGCGATATTGTCGTGGAATTTGACGTTCGTGATAAAGTCCTGACAGC
TATTCGTGGTGTTTCCCTTGATTTGGTTGAAGGGGAAGTATTAGCTTTGGTAGGAGAATCTGGATCAGGTAAGTCTGTGT
TGACTAAAACATTCACTGGGATGTTGGAAGATAATGGGCGCGTTGCGCAAGGTGTTATTAACTATCGTGGTCAAGATTTG
ACAACTTTAAAATCAAATAAAGATTGGGAAAAAATTCGTGGTGCTAAGATCGCTACGATTTTCCAAGATCCTATGACTAG
TTTGGATCCAATCAATACAATAGGAAGCCAAATTACTGAAGTTATTATCAAACACCAAGGCAAAGATGCAAAAGAAGCCA
AAGAAATGGCAATCGACTATATGAAAAAAGTTGGAATACCTGATGCAGAACGTCGGTTTGAAGAGTATCCTTTCCAATAT
TCTGGAGGAATGCGCCAACGTATTGTTATCGCGATTGCTCTTGCCTGTCGTCCAGATATTCTAATTTGTGATGAGCCAAC
AACAGCTTTGGATGTGACAATTCAAGCACAAATTATCGAACTTTTGAAATCATTGCAGAACGAATACCGCTTTACAACTA
TATTTATCACTCATGACTTGGGTGTTGTTGCTAGTATTGCCGATAAAGTAGCGGTTATGTATGCTGGTGAGATTGTTGAA
TACGGGACGGTTGAAGAAATTTTTTACGATCCACGCCATCCTTATACATGGAGCTTGTTATCTAGCTTGCCACAGTTGGC
CAATGATCATGGTGAACTCTTCTCTATCCCAGGAACTCCTCCGTCTCTTTATACCGAGTTGAAAGGTGATGCCTTTGCTC
TTCGTTCGGATTACGCTATGCAAATTGATTTCGAAGAAAAAGCACCACAATTCCAAGTTACAGAAACTCATTGGGCTAAA
ACTTGGTTGCTTCATGAAGATGCACCAAAGGTTCACAAGCCTGAAATTATTGAAAATTTACATGATAAAATTCGCTTGAA
TATGGGCTTTGCTCATTTAGAAGGCTAG

Domains

Predicted by InterproScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-301)

ABC transporter (ABC_tran)

(29-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F2CNN2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

87.252

99.437

0.868
  amiE Streptococcus thermophilus LMG 18311

85.552

99.437

0.851
  amiE Streptococcus thermophilus LMD-9

85.552

99.437

0.851
  oppD Streptococcus mutans UA159

54.155

98.31

0.532

Multiple sequence alignment