Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   RN86_RS05245 Genome accession   NZ_CP012648
Coordinates   1069252..1071210 (+) Length   652 a.a.
NCBI ID   WP_053794409.1    Uniprot ID   -
Organism   Streptococcus gordonii strain KCOM 1506 (= ChDC B679)     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1064252..1076210
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RN86_RS05235 (RN86_05230) pbp3 1065544..1066782 (-) 1239 WP_045634051.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  RN86_RS05240 (RN86_05235) amiA 1067075..1069036 (+) 1962 WP_053794408.1 peptide ABC transporter substrate-binding protein Regulator
  RN86_RS05245 (RN86_05240) amiA3 1069252..1071210 (+) 1959 WP_053794409.1 peptide ABC transporter substrate-binding protein Regulator
  RN86_RS05250 (RN86_05245) amiA 1071460..1073442 (+) 1983 WP_053794410.1 peptide ABC transporter substrate-binding protein Regulator
  RN86_RS05255 (RN86_05250) amiA 1073719..1075710 (+) 1992 WP_053794411.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 652 a.a.        Molecular weight: 72179.00 Da        Isoelectric Point: 5.0922

>NTDB_id=156086 RN86_RS05245 WP_053794409.1 1069252..1071210(+) (amiA3) [Streptococcus gordonii strain KCOM 1506 (= ChDC B679)]
MNKKKRLVGVGLAVLSSVILAACSSTASNTKVYSYVYSNDPDSLDYVVANRATTSDVTGNLIDGLLENDKYGNLIPSLAE
DWTVSKDGLTYTYKLRKGAKWYTSDGEEYAEVKAQDFVTGLKHAADGKSEALYLVQNSIKGLDAYIKGETKDFSTVGVKA
LDDYTVQYTLNKPESYWNSKTTSGILFPINADFLASQGSGFGSAKPSSILYNGPYILKSLTAKSSIEYKKNEKYWDKENV
PIEDVKLSYYDGSDQESLVRNFSDGAYTLARVFPNSSNYASVKKKYADNITYSQQGGTSFFYVFNVNRQSYNHTSKKDDK
QKSDTKAAILNKDFRQAIGFAFDRKAYAAQTNGEDGASMILRNLAVPPTFVQIKDRNFGDVVKEKLASYGQEWSDVKLED
AQDGLYNAEKAKAEFAKAKETLQAQGVNFPIHLDLPVSQSDKAGIQQASSFKQSVESALGKDNVVVDLQQMSEDDFNNTG
YFANSAAQKDYDLSTSGWTPDYQDPSTYLDVFDPTNGGLLQAIGIEPGQNQDVVSALGLNDYKALNDDANKETSDTSVRY
EKYANSQAWLTDSGLTLPSISNGANPLVQKSVPFTRAYSWIGSKGTATNYKYMQLQDDVLTSKDYEKAFKTWMKEKESSN
EKAQKELEKHVK

Nucleotide


Download         Length: 1959 bp        

>NTDB_id=156086 RN86_RS05245 WP_053794409.1 1069252..1071210(+) (amiA3) [Streptococcus gordonii strain KCOM 1506 (= ChDC B679)]
ATGAATAAGAAAAAAAGACTCGTTGGAGTTGGACTTGCAGTTTTATCTTCTGTGATTTTAGCTGCTTGTAGTTCAACAGC
ATCTAATACAAAGGTGTATTCTTATGTATATAGTAATGATCCAGATTCTTTGGACTATGTAGTTGCTAATCGTGCTACCA
CTTCAGATGTGACTGGAAATCTGATTGATGGTTTGCTTGAAAATGATAAGTATGGGAATTTGATTCCGTCTCTTGCTGAA
GATTGGACCGTATCTAAGGATGGTTTGACTTATACTTACAAGCTTCGTAAAGGTGCTAAGTGGTATACTTCAGATGGAGA
AGAGTATGCTGAAGTAAAAGCTCAAGATTTTGTGACAGGATTGAAGCACGCAGCCGATGGCAAATCCGAAGCTCTTTACC
TTGTTCAAAATTCTATCAAAGGATTGGATGCCTATATCAAAGGGGAAACCAAAGACTTTTCTACTGTAGGTGTAAAAGCA
CTGGATGATTATACAGTGCAGTATACTTTGAATAAGCCAGAAAGTTACTGGAATTCGAAGACGACTAGTGGTATCTTATT
CCCGATAAATGCTGATTTCTTAGCTTCCCAAGGAAGTGGTTTTGGATCAGCTAAACCGTCTAGTATTTTATACAATGGTC
CTTATATTTTGAAGTCTTTAACGGCAAAGTCTTCTATTGAATATAAGAAAAACGAAAAATATTGGGATAAAGAAAATGTT
CCTATTGAAGATGTAAAACTATCTTATTATGATGGATCCGATCAAGAATCCTTAGTTCGTAATTTTAGCGATGGTGCTTA
TACCCTGGCTCGTGTATTCCCAAATAGTTCGAACTATGCTTCTGTTAAAAAGAAATATGCGGATAATATTACCTATTCTC
AACAAGGTGGAACTTCATTTTTCTATGTCTTTAATGTAAATCGTCAGTCTTATAATCATACTTCTAAGAAAGATGACAAG
CAAAAATCAGATACCAAGGCTGCTATTTTAAACAAAGATTTCCGTCAGGCAATCGGTTTTGCTTTTGACCGAAAAGCTTA
CGCAGCTCAAACGAATGGTGAAGACGGAGCATCAATGATCTTGCGCAATCTTGCAGTGCCGCCGACATTTGTGCAGATTA
AGGATCGGAATTTTGGAGATGTCGTGAAAGAAAAACTAGCGAGCTACGGCCAAGAGTGGTCTGATGTCAAGTTAGAGGAT
GCCCAAGACGGTCTATATAATGCTGAAAAAGCTAAAGCAGAGTTTGCAAAAGCAAAAGAAACCCTGCAGGCTCAAGGTGT
AAATTTCCCGATTCATCTAGATTTGCCAGTAAGTCAGTCTGATAAGGCCGGAATCCAACAAGCTAGTTCCTTTAAACAGT
CTGTTGAGTCAGCGCTTGGAAAGGACAATGTAGTAGTTGATCTCCAGCAGATGTCCGAAGATGACTTTAATAATACGGGT
TATTTCGCCAACTCGGCTGCTCAAAAAGATTATGATCTTTCAACCAGTGGTTGGACTCCTGATTATCAAGATCCTTCTAC
ATATTTAGATGTTTTTGATCCGACAAATGGTGGATTGCTACAAGCGATTGGAATTGAACCGGGTCAAAATCAAGATGTTG
TGTCAGCTCTAGGATTAAATGATTATAAAGCTCTGAATGATGATGCAAATAAGGAAACGTCTGATACGAGTGTGCGTTAT
GAAAAATATGCAAATTCTCAAGCATGGTTGACAGATAGTGGTTTGACCCTTCCAAGTATCTCAAACGGTGCTAATCCGCT
GGTTCAAAAATCAGTTCCATTTACTAGAGCCTACTCTTGGATTGGAAGTAAGGGGACAGCTACAAATTATAAATACATGC
AACTTCAAGACGATGTCTTGACTTCTAAGGATTATGAGAAGGCATTTAAAACTTGGATGAAAGAAAAAGAATCATCTAAT
GAAAAAGCTCAAAAAGAGTTAGAAAAACATGTAAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(74-513)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

58.752

100

0.592
  amiA Streptococcus salivarius strain HSISS4

58.841

100

0.592
  amiA3 Streptococcus thermophilus LMG 18311

58.447

100

0.589

Multiple sequence alignment