Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   RN86_RS05240 Genome accession   NZ_CP012648
Coordinates   1067075..1069036 (+) Length   653 a.a.
NCBI ID   WP_053794408.1    Uniprot ID   -
Organism   Streptococcus gordonii strain KCOM 1506 (= ChDC B679)     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1062075..1074036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RN86_RS05225 (RN86_05220) sufU 1063268..1063705 (+) 438 WP_008809631.1 Fe-S cluster assembly sulfur transfer protein SufU -
  RN86_RS05230 (RN86_05225) sufB 1063723..1065135 (+) 1413 WP_008809630.1 Fe-S cluster assembly protein SufB -
  RN86_RS05235 (RN86_05230) pbp3 1065544..1066782 (-) 1239 WP_045634051.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  RN86_RS05240 (RN86_05235) amiA 1067075..1069036 (+) 1962 WP_053794408.1 peptide ABC transporter substrate-binding protein Regulator
  RN86_RS05245 (RN86_05240) amiA3 1069252..1071210 (+) 1959 WP_053794409.1 peptide ABC transporter substrate-binding protein Regulator
  RN86_RS05250 (RN86_05245) amiA 1071460..1073442 (+) 1983 WP_053794410.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 653 a.a.        Molecular weight: 72598.74 Da        Isoelectric Point: 4.8791

>NTDB_id=156085 RN86_RS05240 WP_053794408.1 1067075..1069036(+) (amiA) [Streptococcus gordonii strain KCOM 1506 (= ChDC B679)]
MKPVKKLAVLGLTLASVFTLAACGNSNSGASKTYSYVYSTDPDTLDYTNTNRSTTSDVIANLVDGLLENDRYGNLVPSLA
EDWTVSKDGLTYTYKLRKGAKWYTSEGEEYAEVKAQDFVTGLKHAADSNSDALPIVQSSIKGLDAYVKGESKDFSTVGVK
AVDDYTVQYTLNKPESYWNSKTTMGILFPINEEFLKSSGKDFGTVKPSGILYNGPYFLKSFTSKSSIEYTKNDNYWDKNN
VKISDVKLTYFDGSDQEALVRNFKDGTYTQARLYPNSSSYASVQKQYKDNIVYSPQDATSFFYAFNYNRKAYNFTAKTTD
VQKTSTTAALLNKDFRQAINFAFNRTVYGAQQNGQEGATSSLRNSLVPPTFVQIGEKNFGDIVEEDLVSYGDEWKGVKLD
DAQDGLFNVEKAKAEFAKAKEALQAQGVEFPIHLDLPVEQTNNLLVQQANSFKQSVEEALGKDNVVIDVQQMSTENKNNV
TYFAETAAQKDYDVNIAGWGPDFQDPSTYLNIFDPDKGDMLQNIGLEPGQNADLAGKLGLNEFKKLNEEADSEKQDTTAR
YTKYAAAQAWLTDSSLVIPIQSNGGSPLVMKAVPFTKPYSLVGIKGDAYVFKYREVQNDIVTAKDYKAAEKKWKKEKEKS
NAKAQEELADHVK

Nucleotide


Download         Length: 1962 bp        

>NTDB_id=156085 RN86_RS05240 WP_053794408.1 1067075..1069036(+) (amiA) [Streptococcus gordonii strain KCOM 1506 (= ChDC B679)]
ATGAAACCAGTGAAAAAATTAGCTGTTTTAGGGCTTACACTTGCTTCTGTTTTTACTTTAGCGGCATGTGGAAATTCTAA
CTCAGGGGCTTCAAAGACTTATTCTTATGTCTATTCAACAGACCCAGATACCTTGGATTATACAAATACTAATCGTTCAA
CTACGTCTGATGTTATTGCAAACTTAGTGGATGGACTATTAGAAAATGATAGATACGGAAATCTTGTGCCATCTCTGGCA
GAAGATTGGACAGTGTCGAAAGATGGTTTGACTTATACATATAAGCTTCGGAAGGGTGCTAAATGGTACACTTCTGAGGG
TGAAGAATATGCAGAAGTCAAAGCACAGGACTTTGTTACTGGTTTGAAGCACGCGGCTGACAGCAATTCAGATGCGCTTC
CAATTGTTCAAAGCTCTATCAAAGGCTTGGATGCTTATGTAAAAGGTGAAAGTAAGGATTTCTCAACAGTTGGAGTTAAG
GCGGTTGACGATTACACAGTCCAATATACACTCAACAAGCCAGAAAGTTATTGGAATTCTAAAACCACAATGGGTATTCT
TTTCCCAATTAACGAAGAATTTTTAAAATCATCTGGTAAAGATTTCGGTACCGTAAAACCTTCAGGAATTCTCTATAACG
GTCCATATTTCCTGAAGTCCTTCACATCGAAATCATCTATTGAATATACAAAAAATGACAACTATTGGGATAAGAACAAT
GTGAAGATTTCAGACGTCAAGTTGACCTACTTTGATGGTTCTGATCAAGAGGCGCTTGTTCGTAACTTTAAAGATGGTAC
ATACACACAAGCTCGTTTGTATCCAAATAGTTCAAGTTATGCTTCAGTGCAAAAACAATACAAAGACAATATTGTATACT
CTCCTCAAGATGCAACATCATTCTTCTATGCCTTTAACTACAACCGTAAAGCCTATAATTTCACAGCCAAGACAACAGAT
GTACAAAAGACATCTACAACGGCTGCTCTCTTAAACAAAGATTTCCGTCAGGCTATCAACTTCGCTTTCAATCGGACGGT
TTATGGAGCTCAGCAAAACGGTCAAGAGGGAGCAACTAGCTCACTTAGAAACAGCTTGGTGCCACCAACATTCGTTCAGA
TTGGCGAAAAGAACTTTGGAGACATAGTTGAAGAAGATTTGGTAAGCTATGGTGATGAGTGGAAGGGTGTTAAATTAGAC
GATGCTCAAGATGGGCTCTTTAATGTTGAAAAAGCTAAGGCAGAATTTGCCAAGGCAAAAGAAGCTCTCCAAGCACAAGG
TGTTGAATTCCCGATTCACCTAGATCTTCCTGTTGAACAAACAAACAACCTCTTGGTACAACAGGCTAATTCATTTAAAC
AATCAGTTGAAGAAGCACTTGGTAAAGATAATGTTGTTATTGATGTACAGCAAATGTCTACAGAAAACAAAAATAATGTA
ACGTACTTTGCAGAGACTGCAGCTCAAAAAGACTACGATGTCAACATTGCAGGTTGGGGGCCTGACTTCCAAGATCCATC
AACTTATTTGAATATTTTTGATCCAGATAAAGGAGATATGCTCCAAAATATCGGTTTGGAACCAGGACAAAATGCTGATT
TAGCAGGCAAACTGGGCTTGAACGAATTTAAGAAATTAAATGAAGAGGCAGATTCTGAAAAACAAGATACAACTGCTCGC
TATACAAAATATGCAGCAGCTCAAGCTTGGTTAACAGATAGCTCTTTGGTCATTCCGATTCAATCAAACGGTGGTAGTCC
GCTTGTTATGAAGGCAGTTCCGTTCACAAAACCTTACTCTCTGGTTGGTATCAAAGGTGATGCTTACGTCTTTAAGTACA
GAGAAGTTCAAAATGACATTGTAACGGCGAAAGACTACAAAGCCGCTGAGAAAAAATGGAAGAAAGAAAAAGAAAAATCA
AATGCCAAAGCTCAAGAAGAATTGGCTGATCATGTTAAATAG

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-516)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

56.925

100

0.573
  amiA3 Streptococcus thermophilus LMD-9

55.994

100

0.565
  amiA3 Streptococcus thermophilus LMG 18311

55.842

100

0.564

Multiple sequence alignment