Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   BBEV_RS08815 Genome accession   NZ_CP012502
Coordinates   1897220..1898278 (-) Length   352 a.a.
NCBI ID   WP_069365133.1    Uniprot ID   A0A1D7QVS2
Organism   Salisediminibacterium beveridgei strain MLTeJB     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1892220..1903278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBEV_RS08800 (BBEV_1757) - 1893874..1894134 (-) 261 WP_069365130.1 stage V sporulation protein S -
  BBEV_RS08805 (BBEV_1758) - 1894295..1895089 (-) 795 WP_069365131.1 TIGR00282 family metallophosphoesterase -
  BBEV_RS08810 (BBEV_1759) rny 1895289..1896851 (-) 1563 WP_069365132.1 ribonuclease Y -
  BBEV_RS08815 (BBEV_1760) recA 1897220..1898278 (-) 1059 WP_069365133.1 recombinase RecA Machinery gene
  BBEV_RS08820 (BBEV_1761) - 1898429..1900012 (-) 1584 WP_069365134.1 DEAD/DEAH box helicase -
  BBEV_RS08825 (BBEV_1762) cinA 1900036..1901274 (-) 1239 WP_069365135.1 competence/damage-inducible protein A Machinery gene
  BBEV_RS08830 (BBEV_1763) pgsA 1901298..1901876 (-) 579 WP_069365136.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  BBEV_RS08835 (BBEV_1764) - 1902030..1902941 (-) 912 WP_069365137.1 RodZ family helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 38056.42 Da        Isoelectric Point: 5.2020

>NTDB_id=154753 BBEV_RS08815 WP_069365133.1 1897220..1898278(-) (recA) [Salisediminibacterium beveridgei strain MLTeJB]
MSDRKQALDMALKQIEKQFGKGSIMKMGEQPEHRVSTISSGVLALDISLGVGGYPRGRVIEVYGPESSGKTTVALHAIAE
VQRNGGTAAFIDAEHALDPKYASALGVDIDNLLLSQPDTGEQALEIAEALVRSGAVDMVVVDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAVSKSKTITMFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAESLKQGNDIVGNKT
KLKVVKNKVAPPFKTAEVDIMYGQGISREGSILDIASELDIVQKNGAWYSYDGDRMGQGRENAKTFLKEHEEIAGVIDRK
IREHYGLLEPVEVPAPAEDEALEGEDLPMDLK

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=154753 BBEV_RS08815 WP_069365133.1 1897220..1898278(-) (recA) [Salisediminibacterium beveridgei strain MLTeJB]
ATGTCTGATCGGAAACAAGCCTTGGATATGGCTTTGAAACAGATTGAGAAACAATTTGGAAAAGGATCAATTATGAAGAT
GGGTGAGCAGCCCGAGCATCGGGTTTCAACCATTTCGTCGGGTGTTCTGGCTCTGGATATTTCTTTGGGAGTCGGTGGCT
ATCCCCGAGGTCGTGTGATTGAAGTCTATGGACCAGAGTCATCGGGTAAGACAACGGTCGCTCTTCACGCGATTGCAGAA
GTTCAGAGAAATGGCGGAACTGCTGCATTTATTGATGCAGAACACGCGTTGGATCCGAAATACGCTTCTGCACTCGGTGT
GGATATTGATAATCTGCTCCTTTCTCAACCTGATACTGGCGAACAGGCTCTGGAAATAGCTGAGGCACTCGTGCGAAGTG
GTGCGGTTGATATGGTTGTCGTTGACTCCGTAGCAGCTCTTGTTCCGAAAGCGGAGATCGAAGGCGAAATGGGTGATTCT
CACGTAGGCTTACAGGCACGTCTGATGTCTCAGGCTTTACGAAAGTTATCCGGTGCGGTAAGTAAGTCAAAGACAATCAC
AATGTTTATCAACCAGATACGTGAAAAAGTGGGAGTCATGTTCGGAAACCCTGAAACAACACCAGGTGGACGCGCTTTGA
AATTCTATTCTTCAGTGAGACTCGAAGTGCGACGTGCTGAATCATTGAAACAGGGAAATGATATCGTCGGGAACAAGACG
AAGCTGAAAGTCGTTAAAAACAAAGTAGCTCCTCCATTTAAAACTGCAGAAGTAGATATCATGTATGGACAAGGGATTTC
CCGTGAAGGATCAATACTTGATATTGCATCTGAACTTGATATTGTTCAAAAAAACGGAGCCTGGTATTCTTATGATGGCG
ACCGGATGGGGCAAGGCCGGGAAAATGCCAAGACTTTTCTAAAAGAACACGAAGAAATTGCGGGAGTCATCGATCGTAAA
ATTCGTGAACATTACGGATTACTTGAGCCGGTCGAAGTGCCTGCACCGGCGGAAGATGAAGCCCTTGAGGGAGAAGACCT
TCCGATGGATCTGAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(6-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1D7QVS2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

82.263

92.898

0.764
  recA Latilactobacillus sakei subsp. sakei 23K

71.848

96.875

0.696
  recA Streptococcus pneumoniae TIGR4

64.463

100

0.665
  recA Streptococcus pneumoniae Rx1

64.463

100

0.665
  recA Streptococcus pneumoniae D39

64.463

100

0.665
  recA Streptococcus pneumoniae R6

64.463

100

0.665
  recA Streptococcus pyogenes NZ131

65.722

100

0.659
  recA Streptococcus mitis NCTC 12261

64.246

100

0.653
  recA Streptococcus mitis SK321

63.687

100

0.648
  recA Streptococcus mutans UA159

68.278

94.034

0.642
  recA Lactococcus lactis subsp. cremoris KW2

64.583

95.455

0.616
  recA Ralstonia pseudosolanacearum GMI1000

62.908

95.739

0.602
  recA Vibrio cholerae strain A1552

62.798

95.455

0.599
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.798

95.455

0.599
  recA Neisseria gonorrhoeae MS11

64.724

92.614

0.599
  recA Neisseria gonorrhoeae MS11

64.724

92.614

0.599
  recA Neisseria gonorrhoeae strain FA1090

64.724

92.614

0.599
  recA Acinetobacter baylyi ADP1

60.345

98.864

0.597
  recA Helicobacter pylori 26695

60.819

97.159

0.591
  recA Helicobacter pylori strain NCTC11637

60.526

97.159

0.588
  recA Acinetobacter baumannii D1279779

63.354

91.477

0.58
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.043

92.614

0.565
  recA Glaesserella parasuis strain SC1401

62.382

90.625

0.565
  recA Pseudomonas stutzeri DSM 10701

61.562

90.909

0.56
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.939

92.898

0.557
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.577

88.636

0.537

Multiple sequence alignment