Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   BBEV_RS08825 Genome accession   NZ_CP012502
Coordinates   1900036..1901274 (-) Length   412 a.a.
NCBI ID   WP_069365135.1    Uniprot ID   A0A1D7QVT8
Organism   Salisediminibacterium beveridgei strain MLTeJB     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1895036..1906274
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BBEV_RS08810 (BBEV_1759) rny 1895289..1896851 (-) 1563 WP_069365132.1 ribonuclease Y -
  BBEV_RS08815 (BBEV_1760) recA 1897220..1898278 (-) 1059 WP_069365133.1 recombinase RecA Machinery gene
  BBEV_RS08820 (BBEV_1761) - 1898429..1900012 (-) 1584 WP_069365134.1 DEAD/DEAH box helicase -
  BBEV_RS08825 (BBEV_1762) cinA 1900036..1901274 (-) 1239 WP_069365135.1 competence/damage-inducible protein A Machinery gene
  BBEV_RS08830 (BBEV_1763) pgsA 1901298..1901876 (-) 579 WP_069365136.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  BBEV_RS08835 (BBEV_1764) - 1902030..1902941 (-) 912 WP_069365137.1 RodZ family helix-turn-helix domain-containing protein -
  BBEV_RS08840 (BBEV_1765) - 1902959..1903732 (-) 774 WP_069365138.1 DUF3388 domain-containing protein -
  BBEV_RS08845 (BBEV_1766) ymfI 1903862..1904584 (-) 723 WP_198154971.1 elongation factor P 5-aminopentanone reductase -
  BBEV_RS08850 (BBEV_1767) yfmH 1904581..1905882 (-) 1302 WP_069365140.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45417.73 Da        Isoelectric Point: 4.6307

>NTDB_id=154754 BBEV_RS08825 WP_069365135.1 1900036..1901274(-) (cinA) [Salisediminibacterium beveridgei strain MLTeJB]
MNAEIIAIGSELLLGQIVNSNAAYLSKELSVLGVNVYYHETVGDNPERLEKILDQAMSRSDLVITTGGLGPTKDDLTKEV
LASLTKRNLVYDKETEKNIEAFYIRRNQNMTENNRKQAMVLSDSDIIPNRHGLSCGMVVEHQDCRIMMLPGPPNELKPMF
QNEAAPYLRNLLSEHEEIESRVLRFFEIGESRLAEKLDDLIEQQTNPTIAPLASIGEVMLRLTVKGSDKASNNRALENLK
AEILERISEFYIGEGEEPLVNKTVSLLKSKELTVSAAESVTGGLFSATLTSVQGVSSVFPGSIVCYSNQVKEMVLSVPRD
LILTEGVVSESCARVMAEQTRTLMNTDIGISFTGVAGPESLENHTPGKVFIGISDGTATVVHELDLAGSRENIQDRTVKY
GCFYLQKFLLNE

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=154754 BBEV_RS08825 WP_069365135.1 1900036..1901274(-) (cinA) [Salisediminibacterium beveridgei strain MLTeJB]
ATGAATGCAGAAATCATTGCTATCGGTTCAGAGTTGCTTCTAGGCCAAATTGTCAATTCGAACGCCGCCTATTTATCCAA
AGAACTCTCCGTTCTTGGCGTGAATGTATATTATCATGAAACCGTCGGAGATAATCCTGAAAGACTGGAAAAAATTCTTG
ATCAGGCGATGTCAAGATCCGACCTTGTGATTACCACGGGTGGACTTGGCCCGACAAAGGATGATCTCACAAAGGAAGTG
TTGGCATCATTAACGAAGAGAAATCTGGTCTATGATAAAGAGACCGAAAAAAATATCGAGGCATTTTATATTCGTCGAAA
CCAGAACATGACAGAAAATAACCGGAAACAAGCAATGGTTTTATCCGACTCAGACATCATCCCAAATCGGCATGGACTCT
CTTGTGGAATGGTTGTTGAACATCAGGACTGCCGCATTATGATGCTCCCTGGTCCCCCGAATGAATTGAAGCCGATGTTT
CAAAACGAAGCAGCACCATACTTGAGAAATCTTCTCTCTGAACATGAGGAAATTGAATCGAGAGTGCTTCGTTTTTTTGA
AATTGGCGAATCACGATTGGCTGAAAAATTGGATGATTTAATTGAGCAACAGACAAATCCAACCATCGCACCATTGGCAA
GTATTGGAGAAGTGATGCTTAGATTAACGGTTAAAGGAAGTGATAAAGCATCAAATAATCGTGCATTGGAAAATCTTAAA
GCCGAAATACTCGAACGAATCAGTGAATTTTATATTGGTGAAGGAGAAGAACCTCTTGTAAATAAGACTGTTTCATTACT
GAAATCAAAAGAATTAACTGTATCGGCGGCAGAGAGTGTCACAGGTGGGCTCTTTTCTGCAACGCTTACATCTGTTCAGG
GGGTTTCTTCTGTTTTTCCCGGATCAATTGTGTGTTATAGTAATCAAGTGAAGGAAATGGTCTTATCAGTTCCGCGCGAT
CTGATACTGACAGAGGGCGTTGTCAGCGAATCTTGTGCACGGGTAATGGCTGAACAAACGAGAACACTGATGAATACGGA
TATTGGCATAAGTTTCACAGGTGTCGCTGGTCCGGAATCCCTTGAAAATCATACACCTGGAAAGGTATTTATCGGTATTT
CTGACGGAACTGCAACAGTTGTACACGAGCTGGACCTTGCAGGTAGTCGAGAAAATATTCAGGATCGCACAGTGAAATAC
GGCTGTTTCTATTTGCAAAAATTTTTATTAAATGAATAG

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-252)

Competence-damaged protein (CinA)

(257-408)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1D7QVT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

51.961

99.029

0.515
  cinA Streptococcus pneumoniae TIGR4

44.076

100

0.451
  cinA Streptococcus pneumoniae Rx1

43.839

100

0.449
  cinA Streptococcus mitis SK321

43.839

100

0.449
  cinA Streptococcus pneumoniae R6

43.839

100

0.449
  cinA Streptococcus pneumoniae D39

43.602

100

0.447
  cinA Streptococcus mitis NCTC 12261

43.128

100

0.442
  cinA Streptococcus mutans UA159

42.788

100

0.432

Multiple sequence alignment