Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AFK25_RS06710 Genome accession   NZ_CP012152
Coordinates   1270409..1271446 (+) Length   345 a.a.
NCBI ID   WP_026011788.1    Uniprot ID   A0A094JYT7
Organism   Anoxybacillus gonensis strain G2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1265409..1276446
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AFK25_RS06680 (AFK25_06700) ymfI 1265563..1266276 (+) 714 WP_009362684.1 elongation factor P 5-aminopentanone reductase -
  AFK25_RS06685 (AFK25_06705) - 1266342..1266590 (+) 249 WP_009362683.1 DUF3243 domain-containing protein -
  AFK25_RS06690 (AFK25_06710) - 1266773..1267564 (+) 792 WP_009362682.1 DUF3388 domain-containing protein -
  AFK25_RS06695 (AFK25_06715) - 1267574..1268440 (+) 867 WP_019418271.1 helix-turn-helix domain-containing protein -
  AFK25_RS06700 (AFK25_06720) pgsA 1268470..1269048 (+) 579 WP_026011787.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AFK25_RS06705 (AFK25_06725) cinA 1269070..1270302 (+) 1233 WP_021094601.1 competence/damage-inducible protein A Machinery gene
  AFK25_RS06710 (AFK25_06730) recA 1270409..1271446 (+) 1038 WP_026011788.1 recombinase RecA Machinery gene
  AFK25_RS06715 (AFK25_06735) rny 1271724..1273280 (+) 1557 WP_009362675.1 ribonuclease Y -
  AFK25_RS06720 (AFK25_06740) - 1273380..1274175 (+) 796 Protein_1302 TIGR00282 family metallophosphoesterase -
  AFK25_RS06725 (AFK25_06745) spoVS 1274302..1274562 (+) 261 WP_003181955.1 stage V sporulation protein SpoVS -
  AFK25_RS06730 (AFK25_06750) - 1274611..1275570 (+) 960 WP_049720876.1 dipeptidase -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37502.75 Da        Isoelectric Point: 5.1958

>NTDB_id=151912 AFK25_RS06710 WP_026011788.1 1270409..1271446(+) (recA) [Anoxybacillus gonensis strain G2]
MNDRQAALEQALKQIEKQFGKGSIMKLGEQTDRQISTVSSGSLALDIALGVGGYPRGRIIEIYGPESSGKTTVALHAIAE
VQKQGGQAAFIDAEHALDPIYAEKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEIEGEMGDA
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYASVRLEVRRAEQIKQGNDMVGNKT
KIKVVKNKVAPPFKTADVDIMYGEGISKEGEIIDMGAELDIIQKSGAWYSYKDERLGQGRENAKQFLKENPHIMEEIARE
IRQHYGITAGASTTSVREDDLDFLE

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=151912 AFK25_RS06710 WP_026011788.1 1270409..1271446(+) (recA) [Anoxybacillus gonensis strain G2]
TTGAACGATCGTCAAGCAGCATTAGAACAAGCGTTAAAGCAAATTGAGAAGCAGTTTGGAAAAGGTTCAATTATGAAGCT
AGGGGAGCAAACAGATCGTCAAATTTCGACGGTATCGAGTGGCTCTCTTGCTCTTGATATTGCGCTAGGCGTAGGAGGAT
ATCCGCGCGGACGGATTATTGAAATTTACGGTCCGGAGTCTTCGGGGAAAACAACGGTTGCCCTTCACGCGATTGCAGAA
GTGCAAAAGCAAGGAGGTCAAGCTGCATTTATTGATGCGGAACATGCGTTAGACCCTATTTATGCTGAAAAATTAGGGGT
CAATATCGATGAATTGTTGCTTTCACAGCCAGATACAGGAGAGCAAGCGTTAGAAATCGCCGAAGCACTTGTGCGAAGTG
GGGCAGTTGACATTATCGTCATTGACTCAGTCGCAGCTCTTGTTCCGAAGGCAGAAATTGAAGGGGAAATGGGTGATGCT
CACGTTGGATTGCAGGCGCGACTCATGTCCCAAGCGCTACGTAAACTATCAGGCGCCATCAACAAATCTAAAACGATCGC
CATTTTCATTAACCAAATAAGGGAAAAAGTGGGAGTTATGTTTGGGAACCCAGAGACAACTCCTGGAGGTCGTGCATTGA
AGTTTTATGCGTCTGTTCGTTTAGAAGTGCGTCGTGCAGAACAAATTAAACAAGGCAACGACATGGTTGGAAATAAGACG
AAAATTAAAGTCGTGAAAAACAAAGTGGCGCCTCCGTTTAAAACAGCGGATGTAGATATTATGTATGGCGAAGGAATTTC
AAAAGAAGGCGAAATTATTGATATGGGTGCTGAACTCGACATTATTCAAAAAAGTGGCGCTTGGTATTCATATAAAGATG
AGCGATTAGGACAAGGGCGAGAAAATGCAAAACAATTTTTAAAGGAAAATCCACACATTATGGAAGAAATTGCGCGTGAA
ATTCGCCAACATTATGGCATTACAGCAGGGGCATCGACGACATCTGTGCGCGAAGATGATCTAGACTTTTTAGAGTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A094JYT7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

88.073

94.783

0.835
  recA Latilactobacillus sakei subsp. sakei 23K

74.709

99.71

0.745
  recA Streptococcus mitis NCTC 12261

69.591

99.13

0.69
  recA Streptococcus pneumoniae R6

71.386

96.232

0.687
  recA Streptococcus pneumoniae Rx1

71.386

96.232

0.687
  recA Streptococcus pneumoniae D39

71.386

96.232

0.687
  recA Streptococcus pneumoniae TIGR4

71.386

96.232

0.687
  recA Streptococcus mitis SK321

69.096

99.42

0.687
  recA Streptococcus pyogenes NZ131

69.605

95.362

0.664
  recA Streptococcus mutans UA159

69.091

95.652

0.661
  recA Lactococcus lactis subsp. cremoris KW2

68.997

95.362

0.658
  recA Ralstonia pseudosolanacearum GMI1000

66.768

95.072

0.635
  recA Neisseria gonorrhoeae MS11

65.138

94.783

0.617
  recA Neisseria gonorrhoeae strain FA1090

65.138

94.783

0.617
  recA Neisseria gonorrhoeae MS11

65.138

94.783

0.617
  recA Acinetobacter baumannii D1279779

63.018

97.971

0.617
  recA Pseudomonas stutzeri DSM 10701

62.463

98.841

0.617
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.832

94.783

0.614
  recA Acinetobacter baylyi ADP1

60.807

100

0.612
  recA Vibrio cholerae strain A1552

65.421

93.043

0.609
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.421

93.043

0.609
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

64.024

95.072

0.609
  recA Glaesserella parasuis strain SC1401

64.688

92.754

0.6
  recA Helicobacter pylori strain NCTC11637

63.692

94.203

0.6
  recA Helicobacter pylori 26695

63.692

94.203

0.6
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

63.608

91.594

0.583

Multiple sequence alignment