Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | PGJ_RS04725 | Genome accession | NZ_CP011996 |
| Coordinates | 1136897..1137919 (-) | Length | 340 a.a. |
| NCBI ID | WP_004584116.1 | Uniprot ID | A0A0E2LLY6 |
| Organism | Porphyromonas gingivalis AJW4 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1138623..1167673 | 1136897..1137919 | flank | 704 |
Gene organization within MGE regions
Location: 1136897..1167673
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PGJ_RS04725 (PGJ_00009900) | recA | 1136897..1137919 (-) | 1023 | WP_004584116.1 | recombinase RecA | Machinery gene |
| PGJ_RS04730 (PGJ_00009910) | - | 1137940..1138395 (-) | 456 | WP_053444230.1 | peroxiredoxin | - |
| PGJ_RS11740 | - | 1138650..1138874 (-) | 225 | WP_230493505.1 | hypothetical protein | - |
| PGJ_RS10405 | - | 1138764..1139099 (+) | 336 | WP_236683678.1 | hypothetical protein | - |
| PGJ_RS04735 (PGJ_00009930) | - | 1139269..1140180 (+) | 912 | WP_053444231.1 | hypothetical protein | - |
| PGJ_RS04740 (PGJ_00009940) | mnmE | 1140344..1141768 (+) | 1425 | WP_053444232.1 | tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE | - |
| PGJ_RS04745 (PGJ_00009950) | - | 1142014..1142916 (+) | 903 | WP_053444656.1 | helix-turn-helix domain-containing protein | - |
| PGJ_RS04750 (PGJ_00009960) | - | 1143005..1144108 (+) | 1104 | WP_053444233.1 | site-specific integrase | - |
| PGJ_RS04755 (PGJ_00009970) | - | 1144209..1144931 (+) | 723 | WP_053444234.1 | mobilization protein | - |
| PGJ_RS04760 (PGJ_00009980) | - | 1145024..1145386 (+) | 363 | WP_053444235.1 | helix-turn-helix domain-containing protein | - |
| PGJ_RS04765 (PGJ_00009990) | - | 1145393..1146769 (+) | 1377 | WP_053444236.1 | DUF3987 domain-containing protein | - |
| PGJ_RS04770 (PGJ_00010000) | - | 1146867..1147924 (+) | 1058 | Protein_948 | DUF6371 domain-containing protein | - |
| PGJ_RS04775 (PGJ_00010010) | - | 1148031..1148378 (+) | 348 | WP_053444657.1 | plasmid mobilization protein | - |
| PGJ_RS04780 (PGJ_00010020) | - | 1148375..1149298 (+) | 924 | WP_053444237.1 | relaxase/mobilization nuclease domain-containing protein | - |
| PGJ_RS04785 (PGJ_00010030) | - | 1149295..1149990 (+) | 696 | WP_053444238.1 | hypothetical protein | - |
| PGJ_RS04790 (PGJ_00010040) | - | 1150319..1151152 (-) | 834 | WP_053444239.1 | hypothetical protein | - |
| PGJ_RS04795 (PGJ_00010050) | - | 1151238..1152170 (-) | 933 | WP_053444240.1 | site-specific integrase | - |
| PGJ_RS04800 (PGJ_00010060) | - | 1152271..1153356 (+) | 1086 | WP_053444241.1 | restriction endonuclease subunit S | - |
| PGJ_RS04805 (PGJ_00010070) | - | 1153374..1153814 (+) | 441 | WP_053444242.1 | DUF6078 family protein | - |
| PGJ_RS04810 (PGJ_00010080) | - | 1154121..1155272 (-) | 1152 | WP_053444243.1 | restriction endonuclease subunit S | - |
| PGJ_RS04815 (PGJ_00010090) | - | 1155278..1156831 (-) | 1554 | WP_053444244.1 | type I restriction-modification system subunit M | - |
| PGJ_RS04820 (PGJ_00010100) | - | 1156835..1157539 (-) | 705 | WP_053444245.1 | GIY-YIG nuclease family protein | - |
| PGJ_RS04825 (PGJ_00010110) | - | 1157542..1160370 (-) | 2829 | WP_053444246.1 | type I restriction endonuclease subunit R | - |
| PGJ_RS04830 (PGJ_00010120) | - | 1160511..1160735 (-) | 225 | WP_053444247.1 | helix-turn-helix transcriptional regulator | - |
| PGJ_RS04835 (PGJ_00010130) | - | 1160806..1162326 (-) | 1521 | WP_053444248.1 | LA2681 family HEPN domain-containing protein | - |
| PGJ_RS04840 (PGJ_00010140) | - | 1162349..1162507 (-) | 159 | Protein_962 | type II toxin-antitoxin system Y4mF family antitoxin | - |
| PGJ_RS04845 (PGJ_00010150) | - | 1162721..1163989 (-) | 1269 | WP_053444250.1 | type II toxin-antitoxin system HipA family toxin | - |
| PGJ_RS04850 (PGJ_00010160) | - | 1163993..1164313 (-) | 321 | WP_041590594.1 | helix-turn-helix domain-containing protein | - |
| PGJ_RS04855 (PGJ_00010170) | - | 1164710..1165492 (-) | 783 | WP_004584112.1 | DUF4393 domain-containing protein | - |
| PGJ_RS04860 (PGJ_00010180) | - | 1165529..1166014 (-) | 486 | WP_005874045.1 | HU family DNA-binding protein | - |
| PGJ_RS11745 | - | 1166249..1166419 (-) | 171 | WP_080998285.1 | DNA methylase | - |
| PGJ_RS04865 (PGJ_00010190) | - | 1166444..1167529 (-) | 1086 | WP_053444251.1 | IS5-like element ISPg8 family transposase | - |
Sequence
Protein
Download Length: 340 a.a. Molecular weight: 36888.28 Da Isoelectric Point: 5.5493
>NTDB_id=149987 PGJ_RS04725 WP_004584116.1 1136897..1137919(-) (recA) [Porphyromonas gingivalis AJW4]
MAEEKIPTVQDEKKLQALRMATEKIEKTFGKGAIMNMGANTVEDVSVIPSGSIGLDLALGVGGYPRGRIIEIYGPESSGK
TTLAIHAIAEAQKAGGLAAIIDAEHAFDRTYAEKLGVNVDNLWIAQPDNGEQALEIAEQLIRSSAVDIIVIDSVAALTPK
AEIEGEMGDNKVGLHARLMSQALRKMTGAISKSNTTCIFINQLREKIGVLFGNPETTTGGNALKFYASIRIDIRKSTPIK
DGEEIMGHLTKVKVLKNKVAPPFRKAEFDIVFGEGISRSGEIIDLGVELDIIKKSGSWFSYGDTKLGQGREAAKEMIRDN
EELAEELTEKIREAIRNKHS
MAEEKIPTVQDEKKLQALRMATEKIEKTFGKGAIMNMGANTVEDVSVIPSGSIGLDLALGVGGYPRGRIIEIYGPESSGK
TTLAIHAIAEAQKAGGLAAIIDAEHAFDRTYAEKLGVNVDNLWIAQPDNGEQALEIAEQLIRSSAVDIIVIDSVAALTPK
AEIEGEMGDNKVGLHARLMSQALRKMTGAISKSNTTCIFINQLREKIGVLFGNPETTTGGNALKFYASIRIDIRKSTPIK
DGEEIMGHLTKVKVLKNKVAPPFRKAEFDIVFGEGISRSGEIIDLGVELDIIKKSGSWFSYGDTKLGQGREAAKEMIRDN
EELAEELTEKIREAIRNKHS
Nucleotide
Download Length: 1023 bp
>NTDB_id=149987 PGJ_RS04725 WP_004584116.1 1136897..1137919(-) (recA) [Porphyromonas gingivalis AJW4]
ATGGCAGAAGAAAAGATACCCACGGTGCAGGATGAGAAGAAACTGCAAGCCCTGCGAATGGCCACGGAGAAGATAGAGAA
GACATTCGGAAAAGGTGCTATCATGAATATGGGAGCCAATACGGTGGAGGATGTAAGCGTTATCCCCTCTGGCTCCATCG
GTTTGGATTTGGCTCTCGGTGTAGGCGGTTACCCTCGCGGACGTATTATCGAGATATACGGACCGGAATCTTCCGGTAAG
ACCACTCTGGCTATCCATGCCATTGCCGAAGCGCAGAAAGCAGGTGGCTTAGCGGCCATCATCGATGCGGAACATGCTTT
CGACCGCACCTATGCCGAAAAGTTGGGCGTCAATGTGGATAATCTCTGGATAGCACAGCCGGACAACGGTGAACAGGCTT
TGGAAATCGCCGAGCAACTGATTCGCTCTTCTGCTGTCGACATTATAGTCATTGACTCCGTCGCAGCCCTCACGCCCAAA
GCGGAAATAGAAGGTGAAATGGGGGACAACAAGGTCGGTTTGCATGCCCGTCTGATGTCGCAAGCACTGCGTAAGATGAC
CGGAGCCATCAGCAAATCCAATACAACCTGTATCTTCATCAACCAGCTACGAGAGAAGATCGGTGTTTTGTTCGGCAATC
CGGAGACCACCACAGGGGGGAATGCACTGAAATTCTATGCATCCATCCGCATCGACATTCGCAAGAGCACACCGATCAAG
GATGGCGAAGAGATCATGGGACACCTGACCAAGGTGAAAGTGTTGAAAAACAAGGTGGCTCCTCCATTCCGCAAAGCAGA
GTTCGACATTGTATTCGGAGAAGGGATTTCGCGTTCCGGCGAGATCATCGATTTGGGTGTAGAGCTGGATATTATCAAGA
AGAGCGGATCGTGGTTCAGCTATGGCGATACGAAGCTGGGACAGGGACGTGAGGCTGCCAAGGAAATGATTCGGGACAAT
GAGGAATTGGCCGAAGAACTGACTGAAAAAATACGCGAAGCCATTCGCAACAAACATTCATAA
ATGGCAGAAGAAAAGATACCCACGGTGCAGGATGAGAAGAAACTGCAAGCCCTGCGAATGGCCACGGAGAAGATAGAGAA
GACATTCGGAAAAGGTGCTATCATGAATATGGGAGCCAATACGGTGGAGGATGTAAGCGTTATCCCCTCTGGCTCCATCG
GTTTGGATTTGGCTCTCGGTGTAGGCGGTTACCCTCGCGGACGTATTATCGAGATATACGGACCGGAATCTTCCGGTAAG
ACCACTCTGGCTATCCATGCCATTGCCGAAGCGCAGAAAGCAGGTGGCTTAGCGGCCATCATCGATGCGGAACATGCTTT
CGACCGCACCTATGCCGAAAAGTTGGGCGTCAATGTGGATAATCTCTGGATAGCACAGCCGGACAACGGTGAACAGGCTT
TGGAAATCGCCGAGCAACTGATTCGCTCTTCTGCTGTCGACATTATAGTCATTGACTCCGTCGCAGCCCTCACGCCCAAA
GCGGAAATAGAAGGTGAAATGGGGGACAACAAGGTCGGTTTGCATGCCCGTCTGATGTCGCAAGCACTGCGTAAGATGAC
CGGAGCCATCAGCAAATCCAATACAACCTGTATCTTCATCAACCAGCTACGAGAGAAGATCGGTGTTTTGTTCGGCAATC
CGGAGACCACCACAGGGGGGAATGCACTGAAATTCTATGCATCCATCCGCATCGACATTCGCAAGAGCACACCGATCAAG
GATGGCGAAGAGATCATGGGACACCTGACCAAGGTGAAAGTGTTGAAAAACAAGGTGGCTCCTCCATTCCGCAAAGCAGA
GTTCGACATTGTATTCGGAGAAGGGATTTCGCGTTCCGGCGAGATCATCGATTTGGGTGTAGAGCTGGATATTATCAAGA
AGAGCGGATCGTGGTTCAGCTATGGCGATACGAAGCTGGGACAGGGACGTGAGGCTGCCAAGGAAATGATTCGGGACAAT
GAGGAATTGGCCGAAGAACTGACTGAAAAAATACGCGAAGCCATTCGCAACAAACATTCATAA
Similar proteins
Only experimentally validated proteins are listed.