Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   IMCC21906_RS09400 Genome accession   NZ_CP011477
Coordinates   2043355..2044383 (+) Length   342 a.a.
NCBI ID   WP_047011953.1    Uniprot ID   A0A0F7M5W6
Organism   Spongiibacter sp. IMCC21906     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2038355..2049383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMCC21906_RS09385 (IMCC21906_01902) rpoS 2039078..2040052 (+) 975 WP_047011950.1 RNA polymerase sigma factor RpoS -
  IMCC21906_RS09390 (IMCC21906_01903) fdxA 2040114..2040437 (-) 324 WP_047011951.1 ferredoxin FdxA -
  IMCC21906_RS09395 (IMCC21906_01904) mutS 2040579..2043149 (-) 2571 WP_047011952.1 DNA mismatch repair protein MutS -
  IMCC21906_RS09400 (IMCC21906_01905) recA 2043355..2044383 (+) 1029 WP_047011953.1 recombinase RecA Machinery gene
  IMCC21906_RS09405 (IMCC21906_01906) pilU 2044607..2045773 (-) 1167 WP_047011954.1 PilT/PilU family type 4a pilus ATPase Machinery gene
  IMCC21906_RS09415 (IMCC21906_01908) - 2046430..2048505 (-) 2076 WP_082117431.1 pilus assembly protein TadG-related protein -
  IMCC21906_RS09420 (IMCC21906_01909) - 2048517..2048771 (-) 255 WP_047011957.1 DUF3613 domain-containing protein -

Sequence

Protein


Download         Length: 342 a.a.        Molecular weight: 36696.22 Da        Isoelectric Point: 5.5818

>NTDB_id=146170 IMCC21906_RS09400 WP_047011953.1 2043355..2044383(+) (recA) [Spongiibacter sp. IMCC21906]
MDPNKQKALESALGQIERQFGKGSIMKMGDSSREVMPSISTGSLGLDVALGIGGLPCGRIVEIYGPESSGKTTLCLQVMA
EAQKVGKTVAIVDAEHALDPQYAEKLGVNLEDLLVSQPDTGEQALEITDMLVRSGSVDVIVIDSVAALVPKAEIEGDMGD
AHVGLQARLMSQALRKLTGSIKQTNTLVIFINQIRMKIGVMFGNPETTSGGNALKFYASVRLDIRRIGSVKEGDEVTGNE
TRVKVVKNKVSPPFKQAEFQILYGRGIYRLGEVIDLGVKLGLVDKSGAWYAYQGNKIGQGKANAAKFLAENPEIAKEVEG
SIREQLLPKPTPKKVEEAEASE

Nucleotide


Download         Length: 1029 bp        

>NTDB_id=146170 IMCC21906_RS09400 WP_047011953.1 2043355..2044383(+) (recA) [Spongiibacter sp. IMCC21906]
ATGGACCCCAATAAACAGAAAGCACTGGAATCCGCTCTCGGCCAAATCGAACGTCAGTTTGGTAAAGGCTCGATTATGAA
AATGGGTGACAGCTCCAGAGAGGTTATGCCCTCAATCTCCACGGGTTCTTTGGGGCTGGATGTGGCGTTGGGTATTGGTG
GTCTTCCCTGTGGCAGGATTGTCGAAATCTATGGACCTGAATCATCAGGCAAAACCACACTTTGCTTGCAAGTGATGGCC
GAAGCGCAAAAAGTCGGTAAAACCGTCGCCATCGTTGATGCCGAGCATGCACTGGACCCTCAGTACGCAGAAAAACTGGG
TGTGAACTTAGAGGACTTGCTGGTTTCCCAGCCCGACACTGGCGAGCAGGCACTGGAAATTACCGATATGTTGGTGCGTT
CCGGTTCAGTCGACGTCATCGTCATCGACTCGGTAGCGGCACTGGTGCCAAAAGCTGAAATTGAAGGGGACATGGGCGAC
GCTCACGTCGGTTTGCAAGCTCGTCTTATGTCACAAGCCTTGCGCAAGCTGACTGGTAGCATCAAGCAAACCAATACACT
GGTTATTTTCATTAACCAGATTCGGATGAAAATTGGTGTGATGTTCGGCAACCCAGAAACCACCTCGGGCGGTAACGCAC
TGAAGTTTTATGCCTCAGTCCGCTTGGACATTCGCCGCATCGGTTCTGTCAAAGAAGGCGACGAAGTCACCGGCAACGAA
ACCCGCGTCAAAGTAGTGAAAAACAAAGTCTCGCCGCCATTCAAACAAGCAGAATTTCAAATACTCTATGGCCGAGGTAT
TTACCGTCTGGGCGAAGTTATCGACCTGGGGGTGAAGCTGGGTTTAGTAGATAAGTCAGGTGCATGGTATGCCTATCAAG
GCAATAAAATTGGCCAAGGCAAGGCCAACGCGGCTAAGTTCTTAGCAGAGAACCCAGAAATTGCAAAAGAAGTGGAAGGT
TCCATCCGCGAGCAGTTATTGCCTAAACCTACGCCTAAGAAAGTAGAAGAGGCTGAAGCAAGCGAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F7M5W6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Pseudomonas stutzeri DSM 10701

77.681

100

0.784
  recA Vibrio cholerae strain A1552

73.089

95.614

0.699
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.089

95.614

0.699
  recA Ralstonia pseudosolanacearum GMI1000

75.238

92.105

0.693
  recA Acinetobacter baylyi ADP1

69.006

100

0.69
  recA Glaesserella parasuis strain SC1401

69.527

98.83

0.687
  recA Acinetobacter baumannii D1279779

69.643

98.246

0.684
  recA Neisseria gonorrhoeae MS11

72.222

94.737

0.684
  recA Neisseria gonorrhoeae strain FA1090

72.222

94.737

0.684
  recA Neisseria gonorrhoeae MS11

72.222

94.737

0.684
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.526

95.614

0.617
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.388

97.953

0.611
  recA Helicobacter pylori 26695

61.721

98.538

0.608
  recA Helicobacter pylori strain NCTC11637

61.128

98.538

0.602
  recA Bacillus subtilis subsp. subtilis str. 168

63.975

94.152

0.602
  recA Latilactobacillus sakei subsp. sakei 23K

61.442

93.275

0.573
  recA Streptococcus mutans UA159

59.385

95.029

0.564
  recA Streptococcus pneumoniae D39

59.202

95.322

0.564
  recA Streptococcus mitis NCTC 12261

59.202

95.322

0.564
  recA Streptococcus pneumoniae TIGR4

59.202

95.322

0.564
  recA Streptococcus pneumoniae Rx1

59.202

95.322

0.564
  recA Streptococcus pneumoniae R6

59.202

95.322

0.564
  recA Streptococcus mitis SK321

58.896

95.322

0.561
  recA Streptococcus pyogenes NZ131

57.895

94.444

0.547
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.365

92.105

0.547
  recA Lactococcus lactis subsp. cremoris KW2

56.966

94.444

0.538

Multiple sequence alignment