Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | AAT16_RS05960 | Genome accession | NZ_CP011366 |
| Coordinates | 1206288..1207349 (+) | Length | 353 a.a. |
| NCBI ID | WP_046789996.1 | Uniprot ID | A0A0F7HJG3 |
| Organism | Salinicoccus halodurans strain H3B36 isolate soil | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 1148084..1209999 | 1206288..1207349 | within | 0 |
Gene organization within MGE regions
Location: 1148084..1209999
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AAT16_RS05690 (AAT16_05695) | - | 1148643..1148879 (+) | 237 | WP_046789944.1 | acyl carrier protein | - |
| AAT16_RS05695 (AAT16_05700) | rnc | 1148991..1149743 (+) | 753 | WP_046791465.1 | ribonuclease III | - |
| AAT16_RS05700 (AAT16_05705) | smc | 1149743..1153297 (+) | 3555 | WP_046789945.1 | chromosome segregation protein SMC | - |
| AAT16_RS05705 (AAT16_05710) | ftsY | 1153294..1154403 (+) | 1110 | WP_046789946.1 | signal recognition particle-docking protein FtsY | - |
| AAT16_RS05710 (AAT16_05715) | - | 1154403..1154738 (+) | 336 | WP_046789947.1 | putative DNA-binding protein | - |
| AAT16_RS05715 (AAT16_05720) | ffh | 1154750..1156096 (+) | 1347 | WP_046789948.1 | signal recognition particle protein | - |
| AAT16_RS05720 (AAT16_05725) | rpsP | 1156195..1156470 (+) | 276 | WP_046789949.1 | 30S ribosomal protein S16 | - |
| AAT16_RS05725 (AAT16_05730) | - | 1156477..1156704 (+) | 228 | WP_046789950.1 | KH domain-containing protein | - |
| AAT16_RS05730 (AAT16_05735) | rimM | 1156765..1157259 (+) | 495 | WP_046789951.1 | ribosome maturation factor RimM | - |
| AAT16_RS05735 (AAT16_05740) | trmD | 1157256..1157924 (+) | 669 | WP_046789952.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| AAT16_RS05740 (AAT16_05745) | rplS | 1158065..1158412 (+) | 348 | WP_046789953.1 | 50S ribosomal protein L19 | - |
| AAT16_RS05750 (AAT16_05755) | - | 1158740..1161367 (-) | 2628 | WP_046789955.1 | YfhO family protein | - |
| AAT16_RS05755 (AAT16_05760) | - | 1161370..1161756 (-) | 387 | WP_046789956.1 | GtrA family protein | - |
| AAT16_RS05760 (AAT16_05765) | - | 1161743..1162690 (-) | 948 | WP_046789957.1 | glycosyltransferase family 2 protein | - |
| AAT16_RS05765 (AAT16_05770) | ylqF | 1162781..1163632 (+) | 852 | WP_046789958.1 | ribosome biogenesis GTPase YlqF | - |
| AAT16_RS05770 (AAT16_05775) | - | 1163633..1164397 (+) | 765 | WP_046789959.1 | ribonuclease HII | - |
| AAT16_RS05775 (AAT16_05780) | sucC | 1164479..1165648 (+) | 1170 | WP_046789960.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| AAT16_RS05780 (AAT16_05785) | sucD | 1165666..1166574 (+) | 909 | WP_046789961.1 | succinate--CoA ligase subunit alpha | - |
| AAT16_RS05785 (AAT16_05790) | dprA | 1166737..1167591 (+) | 855 | WP_046789962.1 | DNA-processing protein DprA | - |
| AAT16_RS05790 (AAT16_05795) | topA | 1167644..1169710 (+) | 2067 | WP_046789963.1 | type I DNA topoisomerase | - |
| AAT16_RS05795 (AAT16_05800) | xerA | 1169981..1170802 (+) | 822 | WP_420876326.1 | site-specific tyrosine recombinase/integron integrase | - |
| AAT16_RS05800 (AAT16_05805) | hslV | 1170814..1171353 (+) | 540 | WP_046789965.1 | ATP-dependent protease subunit HslV | - |
| AAT16_RS05805 (AAT16_05810) | hslU | 1171368..1172738 (+) | 1371 | WP_046789966.1 | ATP-dependent protease ATPase subunit HslU | - |
| AAT16_RS05810 (AAT16_05815) | codY | 1172758..1173528 (+) | 771 | WP_046789967.1 | GTP-sensing pleiotropic transcriptional regulator CodY | - |
| AAT16_RS05815 (AAT16_05820) | rpsB | 1173678..1174445 (+) | 768 | WP_046789968.1 | 30S ribosomal protein S2 | - |
| AAT16_RS05820 (AAT16_05825) | tsf | 1174557..1175435 (+) | 879 | WP_046789969.1 | translation elongation factor Ts | - |
| AAT16_RS05825 (AAT16_05830) | pyrH | 1175506..1176228 (+) | 723 | WP_046789970.1 | UMP kinase | - |
| AAT16_RS05830 (AAT16_05835) | frr | 1176244..1176801 (+) | 558 | WP_046789971.1 | ribosome recycling factor | - |
| AAT16_RS05835 (AAT16_05840) | - | 1176929..1177681 (+) | 753 | WP_046789972.1 | isoprenyl transferase | - |
| AAT16_RS05840 (AAT16_05845) | - | 1177683..1178471 (+) | 789 | WP_046789973.1 | phosphatidate cytidylyltransferase | - |
| AAT16_RS05845 (AAT16_05850) | dxr | 1178483..1179607 (+) | 1125 | WP_046789974.1 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase | - |
| AAT16_RS05850 (AAT16_05855) | rseP | 1179612..1180895 (+) | 1284 | WP_046789975.1 | RIP metalloprotease RseP | - |
| AAT16_RS05855 (AAT16_05860) | - | 1180908..1182596 (+) | 1689 | WP_046789976.1 | proline--tRNA ligase | - |
| AAT16_RS05860 (AAT16_05865) | - | 1182647..1186933 (+) | 4287 | WP_046789977.1 | PolC-type DNA polymerase III | - |
| AAT16_RS05865 (AAT16_05870) | rimP | 1187054..1187521 (+) | 468 | WP_046789978.1 | ribosome maturation factor RimP | - |
| AAT16_RS05870 (AAT16_05875) | nusA | 1187538..1188590 (+) | 1053 | WP_046789979.1 | transcription termination factor NusA | - |
| AAT16_RS05875 (AAT16_05880) | rnpM | 1188610..1188894 (+) | 285 | WP_046789980.1 | RNase P modulator RnpM | - |
| AAT16_RS05880 (AAT16_05885) | - | 1188891..1189199 (+) | 309 | WP_046789981.1 | L7Ae/L30e/S12e/Gadd45 family ribosomal protein | - |
| AAT16_RS05885 (AAT16_05890) | infB | 1189204..1191360 (+) | 2157 | WP_046789982.1 | translation initiation factor IF-2 | - |
| AAT16_RS05890 (AAT16_05895) | rbfA | 1191367..1191702 (+) | 336 | WP_046789983.1 | 30S ribosome-binding factor RbfA | - |
| AAT16_RS05895 (AAT16_05900) | truB | 1191753..1192676 (+) | 924 | WP_046789984.1 | tRNA pseudouridine(55) synthase TruB | - |
| AAT16_RS05900 (AAT16_05905) | - | 1192673..1193614 (+) | 942 | WP_046789985.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| AAT16_RS05905 (AAT16_05910) | rpsO | 1193714..1193983 (+) | 270 | WP_046789986.1 | 30S ribosomal protein S15 | - |
| AAT16_RS05910 (AAT16_05915) | pnp | 1194093..1196204 (+) | 2112 | WP_143544901.1 | polyribonucleotide nucleotidyltransferase | - |
| AAT16_RS05915 (AAT16_05920) | - | 1196206..1196463 (+) | 258 | WP_046789988.1 | hypothetical protein | - |
| AAT16_RS05920 (AAT16_05925) | - | 1196482..1198155 (+) | 1674 | WP_046789989.1 | ribonuclease J | - |
| AAT16_RS05925 (AAT16_05930) | - | 1198212..1200635 (+) | 2424 | WP_046789990.1 | DNA translocase FtsK | - |
| AAT16_RS05930 (AAT16_05935) | yfmF | 1200646..1201911 (+) | 1266 | WP_046789991.1 | EF-P 5-aminopentanol modification-associated protein YfmF | - |
| AAT16_RS05935 (AAT16_05940) | yfmH | 1201898..1203181 (+) | 1284 | WP_046789992.1 | EF-P 5-aminopentanol modification-associated protein YfmH | - |
| AAT16_RS05940 (AAT16_05945) | - | 1203174..1203860 (+) | 687 | WP_046789993.1 | SDR family NAD(P)-dependent oxidoreductase | - |
| AAT16_RS05945 (AAT16_05950) | - | 1203887..1204690 (+) | 804 | WP_046791466.1 | DUF3388 domain-containing protein | - |
| AAT16_RS05950 (AAT16_05955) | - | 1204699..1205526 (+) | 828 | WP_046789994.1 | helix-turn-helix domain-containing protein | - |
| AAT16_RS05955 (AAT16_05960) | pgsA | 1205531..1206118 (+) | 588 | WP_046789995.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| AAT16_RS05960 (AAT16_05965) | recA | 1206288..1207349 (+) | 1062 | WP_046789996.1 | recombinase RecA | Machinery gene |
| AAT16_RS05965 (AAT16_05970) | rny | 1207516..1209075 (+) | 1560 | WP_046789997.1 | ribonuclease Y | - |
| AAT16_RS05970 (AAT16_05975) | - | 1209120..1209341 (-) | 222 | WP_234960372.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 353 a.a. Molecular weight: 38180.10 Da Isoelectric Point: 4.8309
>NTDB_id=145137 AAT16_RS05960 WP_046789996.1 1206288..1207349(+) (recA) [Salinicoccus halodurans strain H3B36 isolate soil]
MDERQKAIDTVIKNMEKSFGKGAVMKLGDEAGRKVSAVSSGSITLDNALGVGGYPKGRIIEVYGPESSGKTTVALHAIAA
VQKEGGIAAFIDAEHALDPEYAKNLGVDIENLYLSQPDTGEQGLEITEAFVRSGAVDIVVVDSVAALTPRAEIEGEMGDA
HVGLQARLMSQALRKLSGAISKSNTTAMFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKLGQEIVGNRT
KIKVVKNKVAPPFRVAEVDIMYGLGISRTGELIDLGSEHEIIQKSGAWYSYEGERLGQGKENVKEHLKNNPELLAEIEGK
LRNALGFGEKSEEETEEEKDNEASSDSLFEDDK
MDERQKAIDTVIKNMEKSFGKGAVMKLGDEAGRKVSAVSSGSITLDNALGVGGYPKGRIIEVYGPESSGKTTVALHAIAA
VQKEGGIAAFIDAEHALDPEYAKNLGVDIENLYLSQPDTGEQGLEITEAFVRSGAVDIVVVDSVAALTPRAEIEGEMGDA
HVGLQARLMSQALRKLSGAISKSNTTAMFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKLGQEIVGNRT
KIKVVKNKVAPPFRVAEVDIMYGLGISRTGELIDLGSEHEIIQKSGAWYSYEGERLGQGKENVKEHLKNNPELLAEIEGK
LRNALGFGEKSEEETEEEKDNEASSDSLFEDDK
Nucleotide
Download Length: 1062 bp
>NTDB_id=145137 AAT16_RS05960 WP_046789996.1 1206288..1207349(+) (recA) [Salinicoccus halodurans strain H3B36 isolate soil]
ATGGACGAGAGACAAAAAGCGATTGATACAGTGATAAAGAATATGGAGAAGTCGTTCGGTAAAGGGGCGGTCATGAAGCT
TGGGGATGAGGCGGGCCGTAAAGTATCCGCAGTATCCAGCGGTTCCATTACCCTGGACAATGCACTTGGAGTCGGCGGAT
ATCCCAAAGGCAGAATCATTGAAGTCTACGGTCCGGAATCCTCCGGTAAAACGACAGTTGCCCTTCATGCGATCGCTGCT
GTACAAAAGGAAGGCGGTATAGCCGCTTTCATCGATGCAGAACACGCACTTGATCCCGAGTATGCAAAAAATCTCGGTGT
TGATATAGAGAACCTTTACCTGTCACAGCCGGATACAGGCGAGCAGGGACTTGAAATAACTGAAGCATTCGTCAGAAGCG
GTGCAGTGGATATCGTCGTTGTCGATTCTGTTGCAGCACTGACACCAAGAGCAGAAATTGAAGGTGAGATGGGCGATGCA
CACGTCGGTCTGCAGGCGCGTCTCATGAGCCAGGCTCTGAGAAAACTTTCCGGAGCCATCTCCAAAAGTAACACGACAGC
GATGTTCATCAACCAGATCCGTGAAAAGGTCGGTGTGATGTTCGGTAACCCGGAAACAACACCGGGTGGACGGGCTCTTA
AATTCTACAGTTCTGTCCGTCTGGAAGTACGCCGTGCGGAACAGCTGAAACTGGGGCAGGAAATCGTGGGTAACCGGACG
AAGATCAAAGTCGTCAAGAATAAGGTTGCACCGCCATTCCGCGTTGCCGAAGTGGACATCATGTACGGTCTGGGGATTTC
CAGGACCGGCGAACTCATCGATCTTGGATCGGAACATGAAATCATCCAGAAGAGCGGTGCCTGGTATTCCTACGAGGGGG
AACGCCTCGGCCAGGGTAAAGAGAATGTTAAAGAGCATTTGAAAAACAATCCTGAGCTGCTTGCTGAAATTGAAGGGAAA
CTTAGAAATGCCCTCGGTTTTGGAGAGAAGTCAGAGGAAGAGACCGAAGAAGAGAAGGATAATGAAGCATCTTCAGATTC
ATTGTTTGAGGACGATAAATAA
ATGGACGAGAGACAAAAAGCGATTGATACAGTGATAAAGAATATGGAGAAGTCGTTCGGTAAAGGGGCGGTCATGAAGCT
TGGGGATGAGGCGGGCCGTAAAGTATCCGCAGTATCCAGCGGTTCCATTACCCTGGACAATGCACTTGGAGTCGGCGGAT
ATCCCAAAGGCAGAATCATTGAAGTCTACGGTCCGGAATCCTCCGGTAAAACGACAGTTGCCCTTCATGCGATCGCTGCT
GTACAAAAGGAAGGCGGTATAGCCGCTTTCATCGATGCAGAACACGCACTTGATCCCGAGTATGCAAAAAATCTCGGTGT
TGATATAGAGAACCTTTACCTGTCACAGCCGGATACAGGCGAGCAGGGACTTGAAATAACTGAAGCATTCGTCAGAAGCG
GTGCAGTGGATATCGTCGTTGTCGATTCTGTTGCAGCACTGACACCAAGAGCAGAAATTGAAGGTGAGATGGGCGATGCA
CACGTCGGTCTGCAGGCGCGTCTCATGAGCCAGGCTCTGAGAAAACTTTCCGGAGCCATCTCCAAAAGTAACACGACAGC
GATGTTCATCAACCAGATCCGTGAAAAGGTCGGTGTGATGTTCGGTAACCCGGAAACAACACCGGGTGGACGGGCTCTTA
AATTCTACAGTTCTGTCCGTCTGGAAGTACGCCGTGCGGAACAGCTGAAACTGGGGCAGGAAATCGTGGGTAACCGGACG
AAGATCAAAGTCGTCAAGAATAAGGTTGCACCGCCATTCCGCGTTGCCGAAGTGGACATCATGTACGGTCTGGGGATTTC
CAGGACCGGCGAACTCATCGATCTTGGATCGGAACATGAAATCATCCAGAAGAGCGGTGCCTGGTATTCCTACGAGGGGG
AACGCCTCGGCCAGGGTAAAGAGAATGTTAAAGAGCATTTGAAAAACAATCCTGAGCTGCTTGCTGAAATTGAAGGGAAA
CTTAGAAATGCCCTCGGTTTTGGAGAGAAGTCAGAGGAAGAGACCGAAGAAGAGAAGGATAATGAAGCATCTTCAGATTC
ATTGTTTGAGGACGATAAATAA
Similar proteins
Only experimentally validated proteins are listed.