Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AzCIB_RS21285 Genome accession   NZ_CP011072
Coordinates   4745898..4746932 (+) Length   344 a.a.
NCBI ID   WP_050417733.1    Uniprot ID   -
Organism   Azoarcus sp. CIB     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4740898..4751932
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AzCIB_RS21265 (AzCIB_4254) - 4741772..4743685 (-) 1914 WP_232299284.1 flagellar assembly protein A -
  AzCIB_RS21270 (AzCIB_4255) thiL 4743868..4744827 (+) 960 WP_050418496.1 thiamine-phosphate kinase -
  AzCIB_RS21275 (AzCIB_4256) - 4744849..4745328 (+) 480 WP_050417731.1 phosphatidylglycerophosphatase A -
  AzCIB_RS21280 (AzCIB_4257) - 4745333..4745812 (+) 480 WP_050417732.1 nicotinamide-nucleotide amidohydrolase family protein -
  AzCIB_RS21285 (AzCIB_4258) recA 4745898..4746932 (+) 1035 WP_050417733.1 recombinase RecA Machinery gene
  AzCIB_RS21290 (AzCIB_4259) recX 4746950..4747399 (+) 450 WP_050417734.1 recombination regulator RecX -
  AzCIB_RS21295 (AzCIB_4260) lptB 4747386..4748108 (+) 723 WP_050417735.1 LPS export ABC transporter ATP-binding protein -
  AzCIB_RS21300 (AzCIB_4261) rpoN/rpoN1 4748127..4749572 (+) 1446 WP_050417736.1 RNA polymerase factor sigma-54 Machinery gene
  AzCIB_RS21305 (AzCIB_4262) raiA 4749602..4749928 (+) 327 WP_050417737.1 ribosome-associated translation inhibitor RaiA -
  AzCIB_RS21310 (AzCIB_4263) ptsN 4750065..4750550 (+) 486 WP_050418497.1 PTS IIA-like nitrogen regulatory protein PtsN -
  AzCIB_RS21315 (AzCIB_4264) hprK 4750519..4751460 (+) 942 WP_050417738.1 HPr(Ser) kinase/phosphatase -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 36776.20 Da        Isoelectric Point: 5.5841

>NTDB_id=142039 AzCIB_RS21285 WP_050417733.1 4745898..4746932(+) (recA) [Azoarcus sp. CIB]
MDDNKAKALAAALSQIEKQFGKGSIMRMGDGNVEKDIQTVSTGSLGLDIALGLGGLPRGRVVEIYGPESSGKTTLTLQVI
AEMQKLGGTAAFIDAEHALDVGYAEKLGVNITDLLISQPDTGEQALEISDMLVRSGGVDIVVIDSVAALTPKAEIEGEMG
DQLPGLQARLMSQALRKLTANIKRTNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKKGDEVVGS
ETRCKVVKNKVAPPFKEAHFDILYGEGISREGEIIDLGVDKKIVDKSGAWYSYQGDKIGQGKDNTREFLRGNPALAREIE
NKVRVAVGLKELPAEPAQPAAEAA

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=142039 AzCIB_RS21285 WP_050417733.1 4745898..4746932(+) (recA) [Azoarcus sp. CIB]
ATGGACGACAACAAGGCCAAGGCCCTCGCCGCCGCGCTCTCGCAGATCGAGAAGCAGTTCGGCAAGGGTTCGATCATGCG
GATGGGCGACGGCAACGTCGAGAAGGACATCCAGACGGTCTCGACCGGCTCGCTCGGGCTCGACATCGCGCTCGGCCTCG
GCGGCCTGCCGCGCGGCCGCGTCGTCGAAATCTACGGACCGGAATCGTCCGGCAAGACCACGCTGACCCTGCAGGTCATC
GCCGAGATGCAGAAGCTCGGCGGCACCGCAGCCTTCATCGACGCCGAGCACGCACTCGACGTCGGCTACGCCGAGAAGCT
CGGCGTGAACATCACCGACCTGCTGATCTCGCAGCCCGACACCGGCGAGCAGGCGCTCGAGATCTCCGACATGCTGGTGC
GCTCGGGCGGCGTCGACATTGTCGTCATCGACTCGGTCGCGGCCCTGACGCCGAAGGCCGAAATCGAAGGTGAGATGGGC
GACCAGCTGCCCGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCTGCGCAAGCTCACCGCCAACATCAAGCGCACCAACAC
GCTGGTGATCTTCATCAACCAGATCCGCATGAAGATTGGCGTGATGTTCGGCAACCCCGAAACCACCACCGGCGGCAACG
CGCTGAAGTTCTACGCCTCCGTGCGCCTCGACATCCGCCGCACCGGCGCGATCAAGAAGGGCGACGAGGTCGTCGGCTCC
GAAACCCGCTGCAAGGTCGTCAAGAACAAGGTCGCGCCCCCGTTCAAGGAAGCGCACTTCGACATCCTGTACGGAGAGGG
CATCTCGCGCGAAGGCGAGATCATCGACCTCGGCGTGGACAAGAAGATCGTCGACAAGTCGGGCGCCTGGTACTCGTACC
AGGGCGACAAGATCGGCCAGGGCAAGGACAACACGCGCGAGTTCCTGCGCGGCAATCCGGCCCTCGCACGCGAGATCGAG
AACAAGGTGCGGGTCGCGGTCGGCCTCAAGGAACTGCCGGCCGAACCCGCGCAGCCGGCAGCCGAGGCGGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

82.445

92.733

0.765
  recA Pseudomonas stutzeri DSM 10701

75

94.186

0.706
  recA Vibrio cholerae strain A1552

74.074

94.186

0.698
  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.074

94.186

0.698
  recA Neisseria gonorrhoeae MS11

70.414

98.256

0.692
  recA Neisseria gonorrhoeae MS11

70.414

98.256

0.692
  recA Neisseria gonorrhoeae strain FA1090

70.414

98.256

0.692
  recA Acinetobacter baylyi ADP1

72.84

94.186

0.686
  recA Acinetobacter baumannii D1279779

72.531

94.186

0.683
  recA Glaesserella parasuis strain SC1401

71.118

93.605

0.666
  recA Helicobacter pylori strain NCTC11637

64.14

99.709

0.64
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

67.073

95.349

0.64
  recA Helicobacter pylori 26695

63.848

99.709

0.637
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.955

96.221

0.625
  recA Bacillus subtilis subsp. subtilis str. 168

65.046

95.64

0.622
  recA Latilactobacillus sakei subsp. sakei 23K

63.063

96.802

0.61
  recA Streptococcus mutans UA159

61.562

96.802

0.596
  recA Streptococcus mitis NCTC 12261

62.006

95.64

0.593
  recA Streptococcus mitis SK321

62.006

95.64

0.593
  recA Streptococcus pneumoniae Rx1

61.702

95.64

0.59
  recA Streptococcus pneumoniae D39

61.702

95.64

0.59
  recA Streptococcus pneumoniae R6

61.702

95.64

0.59
  recA Streptococcus pneumoniae TIGR4

61.702

95.64

0.59
  recA Streptococcus pyogenes NZ131

61.212

95.93

0.587
  recA Lactococcus lactis subsp. cremoris KW2

60.245

95.058

0.573
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.494

94.186

0.57

Multiple sequence alignment