Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   UB51_RS12250 Genome accession   NZ_CP010976
Coordinates   2832292..2833353 (-) Length   353 a.a.
NCBI ID   WP_044877526.1    Uniprot ID   A0A0D3VBL7
Organism   Paenibacillus sp. IHBB 10380     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2827292..2838353
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UB51_RS12230 (UB51_12235) - 2828313..2828573 (-) 261 WP_044877525.1 stage V sporulation protein S -
  UB51_RS12235 (UB51_12240) - 2828667..2829461 (-) 795 WP_044880104.1 TIGR00282 family metallophosphoesterase -
  UB51_RS12240 (UB51_12245) rny 2829534..2831075 (-) 1542 WP_044880105.1 ribonuclease Y -
  UB51_RS12245 (UB51_12250) - 2831395..2832153 (-) 759 WP_234405617.1 regulatory protein RecX -
  UB51_RS12250 (UB51_12255) recA 2832292..2833353 (-) 1062 WP_044877526.1 recombinase RecA Machinery gene
  UB51_RS12255 (UB51_12260) cinA 2833578..2834840 (-) 1263 WP_044877527.1 competence/damage-inducible protein A Machinery gene
  UB51_RS12260 (UB51_12265) pgsA 2834937..2835524 (-) 588 WP_044877528.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  UB51_RS12265 (UB51_12270) - 2835748..2836239 (-) 492 WP_044877529.1 YajQ family cyclic di-GMP-binding protein -
  UB51_RS28530 - 2836370..2836531 (-) 162 WP_199925008.1 hypothetical protein -
  UB51_RS12270 (UB51_12275) - 2836613..2837554 (-) 942 WP_044877530.1 RodZ domain-containing protein -
  UB51_RS12275 (UB51_12280) - 2837575..2838342 (-) 768 WP_144407010.1 DUF3388 domain-containing protein -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 38081.22 Da        Isoelectric Point: 4.7764

>NTDB_id=141024 UB51_RS12250 WP_044877526.1 2832292..2833353(-) (recA) [Paenibacillus sp. IHBB 10380]
MSDRRAALDVALRQIEKQFGKGSIMKLGESTHMQVEVTSSGSLALDIALGVGGFPRGRIIEVYGPESSGKTTVALHAIAE
VQKAGGQAAFIDAEHALDPKYASNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIIVVDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAVSKSKTTAIFINQLREKIGVMFGNPETTPGGRALKFYSTIRLDVRRVESIKNGNDIVGNRT
KIKIVKNKVAPPFKQADVDMMYGLGISKEGSIVDIGTDLDIVNKSGAWYSYEGERLGQGRENAKQFLKDHPEISDVIENK
IREASNLTNAVVVPTTEDQEAEDLEEQELLEIE

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=141024 UB51_RS12250 WP_044877526.1 2832292..2833353(-) (recA) [Paenibacillus sp. IHBB 10380]
TTGTCAGATCGTCGTGCAGCGCTAGATGTAGCGCTTCGTCAAATAGAAAAACAATTCGGTAAGGGTTCAATTATGAAGTT
AGGTGAATCTACCCATATGCAAGTGGAAGTTACTTCCAGTGGATCGCTAGCTTTGGATATTGCGTTGGGTGTTGGGGGAT
TTCCAAGGGGACGGATTATTGAAGTGTACGGACCTGAATCTTCCGGTAAGACAACTGTAGCTCTTCATGCTATCGCTGAG
GTTCAGAAAGCGGGCGGGCAAGCTGCTTTCATCGATGCGGAACATGCGTTAGACCCTAAATATGCTAGTAACCTAGGGGT
TAATATCGATGAATTGCTTCTATCCCAACCGGATACGGGTGAGCAAGCATTGGAAATTGCAGAGGCTCTGGTACGTAGTG
GAGCCGTAGATATCATTGTTGTTGACTCTGTTGCAGCATTGGTACCGAAAGCTGAGATTGAAGGCGAGATGGGTGATTCC
CATGTGGGTCTACAAGCTCGTTTGATGTCTCAAGCTCTACGTAAACTGTCAGGGGCTGTTAGTAAGTCTAAGACCACTGC
TATCTTTATTAACCAACTCCGTGAGAAAATAGGGGTTATGTTTGGTAATCCTGAAACGACTCCGGGTGGACGTGCTTTGA
AATTCTATTCCACGATTCGTTTAGATGTGCGTCGTGTGGAGAGTATTAAGAATGGAAATGACATCGTAGGTAACCGTACG
AAGATCAAAATCGTGAAGAATAAGGTAGCTCCGCCTTTCAAACAGGCAGATGTTGACATGATGTATGGTCTAGGTATTTC
CAAAGAGGGTAGCATTGTGGATATCGGTACGGATTTAGATATCGTTAACAAGAGTGGCGCTTGGTATTCCTATGAAGGTG
AGCGTTTAGGCCAAGGTCGTGAGAATGCAAAGCAGTTCTTGAAGGATCATCCAGAGATATCTGATGTCATCGAGAACAAG
ATTCGGGAAGCTAGCAATCTTACGAATGCTGTTGTGGTTCCTACAACAGAGGACCAAGAGGCAGAAGATTTAGAAGAACA
AGAACTATTGGAAATTGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D3VBL7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

79.88

94.334

0.754
  recA Latilactobacillus sakei subsp. sakei 23K

71.471

96.317

0.688
  recA Streptococcus pneumoniae TIGR4

65.527

99.433

0.652
  recA Streptococcus pneumoniae Rx1

65.527

99.433

0.652
  recA Streptococcus pneumoniae D39

65.527

99.433

0.652
  recA Streptococcus pneumoniae R6

65.527

99.433

0.652
  recA Streptococcus mitis NCTC 12261

66.57

97.45

0.649
  recA Streptococcus pyogenes NZ131

69.444

91.785

0.637
  recA Streptococcus mutans UA159

69.136

91.785

0.635
  recA Streptococcus mitis SK321

68.923

92.068

0.635
  recA Lactococcus lactis subsp. cremoris KW2

65.663

94.051

0.618
  recA Acinetobacter baylyi ADP1

60.563

100

0.609
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.281

96.884

0.603
  recA Glaesserella parasuis strain SC1401

60.227

99.717

0.601
  recA Neisseria gonorrhoeae MS11

63.174

94.618

0.598
  recA Neisseria gonorrhoeae MS11

63.174

94.618

0.598
  recA Neisseria gonorrhoeae strain FA1090

63.174

94.618

0.598
  recA Ralstonia pseudosolanacearum GMI1000

64.724

92.351

0.598
  recA Acinetobacter baumannii D1279779

61.404

96.884

0.595
  recA Vibrio cholerae strain A1552

64.798

90.935

0.589
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.798

90.935

0.589
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.609

92.635

0.589
  recA Helicobacter pylori 26695

59.366

98.3

0.584
  recA Helicobacter pylori strain NCTC11637

59.078

98.3

0.581
  recA Pseudomonas stutzeri DSM 10701

59.012

97.45

0.575
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.229

91.501

0.569

Multiple sequence alignment