Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   UB51_RS12255 Genome accession   NZ_CP010976
Coordinates   2833578..2834840 (-) Length   420 a.a.
NCBI ID   WP_044877527.1    Uniprot ID   A0A0D3V9U1
Organism   Paenibacillus sp. IHBB 10380     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2828578..2839840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UB51_RS12235 (UB51_12240) - 2828667..2829461 (-) 795 WP_044880104.1 TIGR00282 family metallophosphoesterase -
  UB51_RS12240 (UB51_12245) rny 2829534..2831075 (-) 1542 WP_044880105.1 ribonuclease Y -
  UB51_RS12245 (UB51_12250) - 2831395..2832153 (-) 759 WP_234405617.1 regulatory protein RecX -
  UB51_RS12250 (UB51_12255) recA 2832292..2833353 (-) 1062 WP_044877526.1 recombinase RecA Machinery gene
  UB51_RS12255 (UB51_12260) cinA 2833578..2834840 (-) 1263 WP_044877527.1 competence/damage-inducible protein A Machinery gene
  UB51_RS12260 (UB51_12265) pgsA 2834937..2835524 (-) 588 WP_044877528.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  UB51_RS12265 (UB51_12270) - 2835748..2836239 (-) 492 WP_044877529.1 YajQ family cyclic di-GMP-binding protein -
  UB51_RS28530 - 2836370..2836531 (-) 162 WP_199925008.1 hypothetical protein -
  UB51_RS12270 (UB51_12275) - 2836613..2837554 (-) 942 WP_044877530.1 RodZ domain-containing protein -
  UB51_RS12275 (UB51_12280) - 2837575..2838342 (-) 768 WP_144407010.1 DUF3388 domain-containing protein -
  UB51_RS12280 (UB51_12285) - 2838541..2838795 (-) 255 WP_044877531.1 DUF3243 domain-containing protein -
  UB51_RS12285 (UB51_12290) fabG 2838898..2839668 (-) 771 WP_044880108.1 3-oxoacyl-ACP reductase FabG -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 46073.01 Da        Isoelectric Point: 5.0122

>NTDB_id=141025 UB51_RS12255 WP_044877527.1 2833578..2834840(-) (cinA) [Paenibacillus sp. IHBB 10380]
MKAEIIAVGTELLLGQIVNTNAQFLSQELATMGIDVYFQTVVGDNMSRLQESIELARQRADIILLTGGIGPTQDDLTKDA
LATVLNRTLHIDRLAMEHVDKFFVQRGIHMTENNRRQALAIEGSSPLANSTGLAVGNAISHEGKYYVVLPGPPKEMRPMF
QDEAKPWLLQHALTNEMPIYSTMLKFAGIGESALEERLLDLINNQSDPTIAPYAKEGEVTVRISTKARSEKEAMMKLNAL
EVQIQALLPDHLYANEDIPIEKAIVDLMADRGLTLSAAESCTGGLLMERITSVPGSATMFLGGIVCYSNQLKEKLLNVPH
DLLEGEDAPGAVSAEVAEVLAEQVRMIGDTDFGLSITGVAGPAYSERKPVGLVYVAIAERGKKTEVHELNLTGNRDSIRH
RTVKSLLYRLWRTIMLSEKL

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=141025 UB51_RS12255 WP_044877527.1 2833578..2834840(-) (cinA) [Paenibacillus sp. IHBB 10380]
ATGAAGGCAGAGATTATTGCAGTAGGAACGGAGCTTTTACTTGGGCAAATTGTGAATACCAATGCGCAATTTCTATCACA
AGAACTAGCAACAATGGGTATTGATGTATACTTTCAGACCGTAGTTGGCGACAACATGTCGAGACTCCAGGAGTCTATTG
AATTAGCGCGTCAGCGTGCAGATATCATTCTATTGACCGGTGGGATTGGACCGACTCAAGATGATTTGACGAAAGATGCA
TTGGCTACCGTACTGAATCGTACATTACATATAGATCGACTTGCAATGGAGCATGTGGACAAGTTCTTCGTACAACGCGG
TATTCATATGACCGAGAATAATCGTAGGCAAGCACTCGCTATTGAGGGAAGTTCTCCGCTAGCTAATTCAACGGGACTGG
CTGTAGGTAATGCTATTTCACATGAAGGGAAATATTACGTCGTACTTCCGGGGCCTCCTAAAGAGATGAGACCTATGTTT
CAAGATGAAGCCAAACCGTGGCTCTTGCAGCATGCTTTAACGAATGAGATGCCTATTTATTCTACCATGCTGAAATTTGC
TGGAATTGGTGAATCTGCTTTAGAGGAGCGCCTTCTAGATCTCATTAACAACCAGAGTGACCCAACCATTGCTCCCTACG
CCAAAGAAGGGGAGGTAACCGTTAGAATTTCTACTAAAGCACGAAGTGAAAAAGAAGCGATGATGAAACTAAATGCTTTA
GAAGTACAAATTCAAGCACTGCTTCCAGATCACTTATATGCGAATGAAGATATACCGATTGAGAAAGCGATTGTAGACCT
TATGGCTGACCGTGGGCTCACACTCAGTGCTGCAGAGAGTTGTACAGGGGGGCTACTGATGGAACGCATTACATCCGTCC
CAGGGAGCGCGACTATGTTTCTTGGTGGTATTGTATGTTACTCGAATCAGTTGAAGGAAAAGCTGTTGAATGTTCCTCAT
GATCTACTTGAAGGCGAGGATGCTCCGGGTGCAGTTAGTGCAGAAGTAGCTGAAGTATTGGCTGAACAGGTAAGAATGAT
CGGGGATACAGATTTTGGTCTTTCGATTACGGGGGTTGCCGGTCCTGCCTATTCGGAGCGAAAGCCAGTGGGATTAGTAT
ATGTTGCTATTGCCGAACGAGGTAAGAAAACGGAGGTTCATGAGCTTAACTTAACGGGTAATCGAGATTCAATTCGTCAT
CGCACGGTTAAAAGCTTACTCTATCGTCTATGGAGAACAATCATGCTAAGTGAGAAGTTGTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Competence-damaged protein (CinA)

(260-413)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D3V9U1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis NCTC 12261

47.43

100

0.483
  cinA Streptococcus mitis SK321

47.196

100

0.481
  cinA Streptococcus pneumoniae TIGR4

47.196

100

0.481
  cinA Streptococcus pneumoniae R6

46.963

100

0.479
  cinA Streptococcus pneumoniae Rx1

46.963

100

0.479
  cinA Streptococcus pneumoniae D39

46.729

100

0.476
  cinA Streptococcus mutans UA159

46.336

100

0.467
  cinA Bacillus subtilis subsp. subtilis str. 168

47.146

95.952

0.452
  cinA Streptococcus suis isolate S10

44.241

90.952

0.402

Multiple sequence alignment