Detailed information NTG0139174

Bioinformatically predicted

Overview

• Name: recA
• Type: Machinery gene
• Locus tag: PG1C_RS01240
• Genome accession: NZ_CP010554
• Coordinates: 231341..232357 (-)
• Length: 338 a.a.
• NCBI ID: WP_202635641.1
• Uniprot ID: A0A0C5J6U2
• Organism: Rugosibacter aromaticivorans strain Ca6
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 226341..237357

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PG1C_RS01205 (PG1C_01170)	-	226497..226808 (-)	312	WP_202635634.1	PsiF family protein	-
PG1C_RS01210 (PG1C_01175)	hprK	226889..227836 (-)	948	WP_202635635.1	HPr(Ser) kinase/phosphatase	-
PG1C_RS01215 (PG1C_01180)	ptsN	227821..228279 (-)	459	WP_202635636.1	PTS IIA-like nitrogen regulatory protein PtsN	-
PG1C_RS01220 (PG1C_01185)	hpf	228346..228666 (-)	321	WP_202635637.1	ribosome hibernation-promoting factor, HPF/YfiA family	-
PG1C_RS01225 (PG1C_01190)	rpoN/rpoN1	228694..230139 (-)	1446	WP_202635638.1	RNA polymerase factor sigma-54	Machinery gene
PG1C_RS01230 (PG1C_01195)	lptB	230139..230891 (-)	753	WP_202635639.1	LPS export ABC transporter ATP-binding protein	-
PG1C_RS01235 (PG1C_01200)	-	230888..231334 (-)	447	WP_202635640.1	regulatory protein RecX	-
PG1C_RS01240 (PG1C_01205)	recA	231341..232357 (-)	1017	WP_202635641.1	recombinase RecA	Machinery gene
PG1C_RS01245 (PG1C_01210)	-	232421..232933 (-)	513	WP_202635642.1	CinA family protein	-
PG1C_RS01250 (PG1C_01215)	-	232936..233439 (-)	504	WP_202635643.1	phosphatidylglycerophosphatase A	-
PG1C_RS01255 (PG1C_01220)	thiL	233457..234419 (-)	963	WP_202635644.1	thiamine-phosphate kinase	-
PG1C_RS01260 (PG1C_01225)	nusB	234442..234876 (-)	435	WP_202635645.1	transcription antitermination factor NusB	-
PG1C_RS01265 (PG1C_01230)	ribH	234876..235331 (-)	456	WP_414629211.1	6,7-dimethyl-8-ribityllumazine synthase	-
PG1C_RS01270 (PG1C_01235)	ribBA	235377..236468 (-)	1092	WP_202635647.1	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	-
PG1C_RS01275 (PG1C_01240)	-	236508..237122 (-)	615	WP_202635648.1	riboflavin synthase	-

Sequence

Protein

• Length: 338 a.a.
• Molecular weight: 36089.32 Da
• Isoelectric Point: 5.3235

>NTDB_id=139174 PG1C_RS01240 WP_202635641.1 231341..232357(-) (recA) [Rugosibacter aromaticivorans strain Ca6]
MDENKSKALQAALAQIEKQFGKGSIMKMGEGNVSDDIQIVSTGSLGLDIALGIGGLPRGRVVEIYGPESSGKTTLCLHVV
AEIQKAGGVAAYIDAENALDPGYAAKLGVNVPDMLISQPDTGEQGLEIADMLVRSGSVDLVVIDSVAALTPRAEIEGEMG
DQLPGLQARLMSQALRKLTSNIKRTNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRMDIRRTGAIKKGDEVIGN
ETRVKVVKNKVAPPFREAHFDILYGEGISREGEIVELGVEHKIVEKSGAWYAYNGEKIGQGKDNARDFLRERADLATEIE
NKVRAAVGVAGLSAPPAE

Nucleotide

• Length: 1017 bp

>NTDB_id=139174 PG1C_RS01240 WP_202635641.1 231341..232357(-) (recA) [Rugosibacter aromaticivorans strain Ca6]
ATGGACGAAAATAAAAGCAAAGCACTTCAGGCAGCACTAGCCCAGATTGAAAAACAGTTCGGCAAGGGCTCCATCATGAA
AATGGGCGAAGGCAATGTCAGCGACGACATTCAAATCGTCTCGACAGGCTCGCTGGGGCTGGACATTGCCTTGGGCATCG
GTGGCTTGCCGCGTGGCCGCGTCGTTGAAATCTACGGCCCTGAATCTTCCGGCAAAACAACCTTATGTTTGCACGTGGTC
GCTGAAATTCAGAAAGCGGGGGGTGTTGCTGCGTATATCGATGCAGAAAATGCACTCGACCCCGGCTATGCCGCCAAGCT
GGGCGTGAATGTTCCCGACATGCTGATCTCGCAACCCGATACAGGCGAACAGGGGCTGGAAATCGCTGACATGCTGGTGC
GTTCCGGCAGCGTGGATCTCGTGGTCATTGATTCAGTCGCAGCGCTCACGCCACGCGCTGAAATCGAAGGTGAAATGGGT
GATCAACTGCCGGGCTTGCAAGCGCGGTTGATGTCGCAAGCCTTGCGCAAGCTGACATCGAACATCAAGCGCACCAATAC
GCTGGTCATTTTCATCAATCAGATTCGCATGAAGATCGGCGTCATGTTTGGCAGCCCCGAAACAACCACCGGTGGCAATG
CGCTCAAGTTTTACGCGTCGGTACGGATGGATATCCGTCGCACCGGTGCCATCAAAAAAGGTGACGAGGTCATTGGCAAC
GAAACCCGCGTCAAAGTTGTCAAGAACAAGGTGGCACCGCCATTTCGCGAAGCACATTTCGACATTCTCTACGGGGAAGG
TATTTCACGCGAAGGTGAAATCGTCGAGCTGGGTGTTGAACACAAAATCGTTGAAAAATCTGGTGCCTGGTATGCCTATA
ACGGCGAGAAAATTGGCCAAGGCAAAGACAACGCACGTGACTTTCTACGTGAACGCGCCGATCTCGCCACTGAAATTGAA
AACAAGGTGCGCGCGGCCGTCGGTGTTGCCGGATTAAGCGCCCCCCCGGCTGAGTGA

Domains

Predicted by InterproScan.

• recA bacterial DNA recombination protein (RecA) (7-269)

3D structure

• AlphaFold DB: A0A0C5J6U2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recA	Ralstonia pseudosolanacearum GMI1000	81.505	94.379	0.769
recA	Pseudomonas stutzeri DSM 10701	72.923	96.154	0.701
recA	Neisseria gonorrhoeae strain FA1090	72.036	97.337	0.701
recA	Neisseria gonorrhoeae MS11	72.036	97.337	0.701
recA	Neisseria gonorrhoeae MS11	72.036	97.337	0.701
recA	Acinetobacter baylyi ADP1	70.679	95.858	0.678
recA	Acinetobacter baumannii D1279779	68.278	97.929	0.669
recA	Vibrio cholerae strain A1552	69.444	95.858	0.666
recA	Vibrio cholerae O1 biovar El Tor strain E7946	69.444	95.858	0.666
recA	Glaesserella parasuis strain SC1401	69.565	95.266	0.663
recA	Latilactobacillus sakei subsp. sakei 23K	64.634	97.041	0.627
recA	Bacillus subtilis subsp. subtilis str. 168	63.804	96.45	0.615
recA	Helicobacter pylori strain NCTC11637	63.222	97.337	0.615
recA	Helicobacter pylori 26695	62.918	97.337	0.612
recA	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	62.162	98.521	0.612
recA	Riemerella anatipestifer ATCC 11845 = DSM 15868	62.805	97.041	0.609
recA	Lactococcus lactis subsp. cremoris KW2	62.614	97.337	0.609
recA	Streptococcus mutans UA159	61.446	98.225	0.604
recA	Streptococcus pyogenes NZ131	60.909	97.633	0.595
recA	Streptococcus pneumoniae D39	60.79	97.337	0.592
recA	Streptococcus pneumoniae TIGR4	60.79	97.337	0.592
recA	Streptococcus pneumoniae Rx1	60.79	97.337	0.592
recA	Streptococcus pneumoniae R6	60.79	97.337	0.592
recA	Streptococcus mitis SK321	60.182	97.337	0.586
recA	Streptococcus mitis NCTC 12261	60.182	97.337	0.586
recA	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	59.202	96.45	0.571