Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   PG1C_RS01225 Genome accession   NZ_CP010554
Coordinates   228694..230139 (-) Length   481 a.a.
NCBI ID   WP_202635638.1    Uniprot ID   -
Organism   Rugosibacter aromaticivorans strain Ca6     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 223694..235139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PG1C_RS01205 (PG1C_01170) - 226497..226808 (-) 312 WP_202635634.1 PsiF family protein -
  PG1C_RS01210 (PG1C_01175) hprK 226889..227836 (-) 948 WP_202635635.1 HPr(Ser) kinase/phosphatase -
  PG1C_RS01215 (PG1C_01180) ptsN 227821..228279 (-) 459 WP_202635636.1 PTS IIA-like nitrogen regulatory protein PtsN -
  PG1C_RS01220 (PG1C_01185) hpf 228346..228666 (-) 321 WP_202635637.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  PG1C_RS01225 (PG1C_01190) rpoN/rpoN1 228694..230139 (-) 1446 WP_202635638.1 RNA polymerase factor sigma-54 Machinery gene
  PG1C_RS01230 (PG1C_01195) lptB 230139..230891 (-) 753 WP_202635639.1 LPS export ABC transporter ATP-binding protein -
  PG1C_RS01235 (PG1C_01200) - 230888..231334 (-) 447 WP_202635640.1 regulatory protein RecX -
  PG1C_RS01240 (PG1C_01205) recA 231341..232357 (-) 1017 WP_202635641.1 recombinase RecA Machinery gene
  PG1C_RS01245 (PG1C_01210) - 232421..232933 (-) 513 WP_202635642.1 CinA family protein -
  PG1C_RS01250 (PG1C_01215) - 232936..233439 (-) 504 WP_202635643.1 phosphatidylglycerophosphatase A -
  PG1C_RS01255 (PG1C_01220) thiL 233457..234419 (-) 963 WP_202635644.1 thiamine-phosphate kinase -
  PG1C_RS01260 (PG1C_01225) nusB 234442..234876 (-) 435 WP_202635645.1 transcription antitermination factor NusB -

Sequence

Protein


Download         Length: 481 a.a.        Molecular weight: 53199.16 Da        Isoelectric Point: 5.0007

>NTDB_id=139173 PG1C_RS01225 WP_202635638.1 228694..230139(-) (rpoN/rpoN1) [Rugosibacter aromaticivorans strain Ca6]
MKQSLQLKVSQHLTLTPQLQQAIRLLQLSTLELNAEIDQALQENPLLERIESDQQSYTSALDLPTPSSTTPEANEPFEEP
AEFSGGGEEGWGTEFSSSTGPRDPNDDDIDGGETQTASISLQEHLNTQLMMSPLSDRERMLTALLIESLNDDGYLVQSLD
DLLELFPADETDHETLREELAGALRHVQNFDPSGVGARSAKECLTLQLKNLPPSPECQLALLIVENHLDHLAAHDFARIK
KSLRCSEDDLRIAQELICSLNPHPGSQFSALDVRYVIPDVTVRKVRKEWIVTLNNEAMPRLRINKLYADILRGAGNGAGS
STGLAAQLQEAKWLIKNVQQRFDTILRVSQAIVDRQRAFFDHGAVAMRPLVLREIAEAVNLHESTISRVTTQKYLASPRG
VYELKYFFGSHVATDSGGAASSTAIRALIKQLVSAEDGKKPLSDARLADILGEQGIVVARRTVAKYRELLHIPPVNLRKS
L

Nucleotide


Download         Length: 1446 bp        

>NTDB_id=139173 PG1C_RS01225 WP_202635638.1 228694..230139(-) (rpoN/rpoN1) [Rugosibacter aromaticivorans strain Ca6]
ATGAAACAGTCACTCCAGCTCAAAGTCTCGCAGCATCTGACGCTGACACCCCAGTTGCAACAGGCCATTCGTCTGCTGCA
ACTCTCGACACTTGAGCTCAACGCAGAAATTGATCAAGCCCTGCAAGAAAATCCCTTGCTGGAACGTATCGAATCTGATC
AACAAAGCTACACCTCAGCGCTGGATCTCCCCACGCCATCATCAACAACGCCTGAGGCGAATGAACCCTTTGAAGAGCCT
GCGGAATTTAGCGGTGGCGGCGAAGAGGGCTGGGGCACTGAGTTTTCTAGCAGCACTGGCCCGCGCGACCCTAACGACGA
TGACATCGATGGCGGTGAAACACAAACCGCCAGCATCAGCCTGCAAGAGCACCTCAACACGCAGCTGATGATGTCGCCTC
TGTCTGATCGCGAACGTATGCTCACCGCTTTGCTGATCGAATCACTTAATGACGATGGCTATCTCGTGCAATCACTGGAT
GATTTGCTGGAGCTATTCCCTGCAGACGAAACCGATCATGAGACACTGCGCGAAGAACTGGCTGGCGCACTGCGTCACGT
ACAGAATTTTGACCCATCTGGCGTCGGCGCTCGCAGCGCTAAAGAATGCCTCACTCTGCAACTGAAGAATTTGCCGCCAT
CCCCGGAATGCCAGCTGGCGCTACTCATTGTTGAAAACCACCTGGATCACTTGGCTGCACACGATTTCGCTCGCATCAAA
AAATCCCTGCGTTGTTCAGAAGACGATCTGCGCATAGCGCAAGAGCTCATTTGCTCACTCAACCCGCATCCCGGCTCGCA
ATTTTCTGCGCTGGATGTCCGCTATGTAATCCCCGATGTCACCGTAAGAAAAGTGCGTAAGGAATGGATCGTGACGCTTA
ACAACGAGGCCATGCCAAGGCTGCGCATCAACAAACTCTATGCTGATATTTTGCGGGGGGCCGGCAATGGTGCCGGTAGT
TCAACGGGGCTAGCGGCTCAGCTGCAAGAAGCCAAATGGCTGATTAAAAATGTGCAGCAACGTTTTGATACCATCTTGCG
TGTATCGCAAGCCATTGTCGATCGTCAGCGCGCCTTCTTCGACCATGGTGCAGTTGCCATGCGCCCGTTAGTTCTTCGCG
AAATAGCGGAAGCCGTCAACTTGCATGAATCAACCATTTCCCGAGTGACCACCCAAAAATATCTGGCGAGCCCCCGGGGC
GTTTATGAGCTTAAATACTTTTTTGGCAGCCATGTCGCCACAGATTCTGGCGGCGCGGCGTCAAGTACCGCAATACGCGC
ACTGATCAAGCAGCTGGTCAGCGCCGAGGATGGGAAAAAACCGCTCTCGGATGCGCGTCTTGCGGATATTCTCGGCGAGC
AGGGGATCGTCGTAGCACGCCGCACCGTAGCAAAGTATCGTGAATTGCTACACATCCCGCCCGTCAATCTCAGAAAGAGT
CTCTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54, DNA binding domain (Sigma54_DBD)

(324-479)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(114-307)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

55.556

100

0.582

Multiple sequence alignment