Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   QR42_RS08210 Genome accession   NZ_CP010075
Coordinates   1663097..1664140 (+) Length   347 a.a.
NCBI ID   WP_039178719.1    Uniprot ID   A0AAP7UK42
Organism   Bacillus sp. WP8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1658097..1669140
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QR42_RS08185 (QR42_08185) - 1658890..1659147 (+) 258 WP_024424114.1 DUF3243 domain-containing protein -
  QR42_RS08190 (QR42_08190) - 1659279..1660070 (+) 792 WP_003211480.1 DUF3388 domain-containing protein -
  QR42_RS08195 (QR42_08195) - 1660094..1660993 (+) 900 WP_039178712.1 helix-turn-helix domain-containing protein -
  QR42_RS08200 (QR42_08200) pgsA 1661069..1661650 (+) 582 WP_039178715.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QR42_RS08205 (QR42_08205) cinA 1661667..1662917 (+) 1251 WP_039178717.1 competence/damage-inducible protein A Machinery gene
  QR42_RS08210 (QR42_08210) recA 1663097..1664140 (+) 1044 WP_039178719.1 recombinase RecA Machinery gene
  QR42_RS08215 (QR42_08215) - 1664283..1665458 (+) 1176 WP_039178720.1 serine hydrolase domain-containing protein -
  QR42_RS08220 (QR42_08220) rny 1665692..1667254 (+) 1563 WP_003211958.1 ribonuclease Y -
  QR42_RS08225 (QR42_08225) - 1667345..1668139 (+) 795 WP_039178723.1 TIGR00282 family metallophosphoesterase -
  QR42_RS08230 (QR42_08230) spoVS 1668341..1668601 (+) 261 WP_003211281.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37879.09 Da        Isoelectric Point: 4.7661

>NTDB_id=134046 QR42_RS08210 WP_039178719.1 1663097..1664140(+) (recA) [Bacillus sp. WP8]
MSDRQAALDMALKQIEKQFGKGSIMKLGEQTDTRISTVPSGSLALDTALGIGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQQQGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIVVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDIMGNKT
RIKVVKNKVAPPFRIAEVDIMYGEGISKEGEIIDLGSELDIVQKSGAWYSYQEERLGQGRENAKQFLKENKDIMLMIQEQ
IREHYGLDTNGVTQQESEEALEQLELE

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=134046 QR42_RS08210 WP_039178719.1 1663097..1664140(+) (recA) [Bacillus sp. WP8]
ATGAGTGATCGTCAAGCAGCCTTAGATATGGCTCTTAAACAAATAGAAAAACAGTTTGGTAAAGGCTCTATTATGAAACT
AGGAGAGCAAACAGATACACGTATTTCAACAGTACCTAGTGGTTCGTTAGCACTTGATACTGCGCTTGGAATAGGCGGAT
ATCCCCGAGGCCGTATTATCGAAGTATATGGTCCAGAGAGTTCTGGTAAAACGACAGTAGCCCTTCATGCCATTGCTGAA
GTTCAGCAGCAGGGAGGACAAGCTGCATTTATTGATGCAGAGCATGCACTCGATCCAGTTTACGCTCAAAAACTAGGTGT
CAACATTGATGAACTGTTACTTTCTCAGCCGGATACAGGAGAGCAAGCACTTGAAATTGCAGAAGCTCTTGTCCGCAGTG
GGGCAGTTGATATTGTTGTGATTGACTCTGTAGCTGCTCTTGTACCAAAAGCAGAGATTGAAGGAGACATGGGTGATTCA
CACGTTGGTCTTCAAGCGCGTTTGATGTCTCAAGCACTTCGTAAACTATCAGGTGCTATCAACAAATCAAAAACAATTGC
CATCTTTATTAACCAAATTCGTGAAAAAGTTGGTGTCATGTTTGGTAACCCTGAAACAACGCCTGGTGGACGTGCGCTAA
AGTTCTATTCATCTGTTCGTTTAGAAGTGCGCCGTGCTGAACAGCTGAAACAAGGCAATGACATTATGGGGAATAAAACG
AGAATTAAAGTGGTCAAAAACAAAGTAGCACCGCCATTCCGTATTGCGGAAGTAGACATTATGTACGGTGAAGGGATTTC
AAAAGAGGGAGAAATCATCGACCTTGGAAGCGAACTAGATATCGTACAAAAGAGCGGCGCTTGGTATTCTTACCAAGAGG
AACGTCTTGGACAAGGCCGTGAAAATGCGAAACAGTTCCTAAAAGAAAATAAAGATATCATGCTGATGATCCAGGAGCAA
ATTCGTGAACATTACGGCTTGGATACTAACGGAGTAACGCAGCAAGAATCTGAAGAGGCGCTAGAACAATTAGAATTAGA
ATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

96.697

95.965

0.928
  recA Latilactobacillus sakei subsp. sakei 23K

75.077

93.66

0.703
  recA Streptococcus pneumoniae D39

67.836

98.559

0.669
  recA Streptococcus pneumoniae R6

67.836

98.559

0.669
  recA Streptococcus pneumoniae Rx1

67.836

98.559

0.669
  recA Streptococcus pneumoniae TIGR4

67.836

98.559

0.669
  recA Streptococcus mitis NCTC 12261

67.151

99.135

0.666
  recA Streptococcus mutans UA159

67.055

98.847

0.663
  recA Streptococcus mitis SK321

68.788

95.101

0.654
  recA Streptococcus pyogenes NZ131

67.988

94.524

0.643
  recA Lactococcus lactis subsp. cremoris KW2

66.364

95.101

0.631
  recA Neisseria gonorrhoeae strain FA1090

64.118

97.983

0.628
  recA Neisseria gonorrhoeae MS11

64.118

97.983

0.628
  recA Neisseria gonorrhoeae MS11

64.118

97.983

0.628
  recA Helicobacter pylori 26695

62.5

99.135

0.62
  recA Helicobacter pylori strain NCTC11637

62.5

99.135

0.62
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.353

97.983

0.611
  recA Acinetobacter baumannii D1279779

62.13

97.406

0.605
  recA Ralstonia pseudosolanacearum GMI1000

65.615

91.354

0.599
  recA Glaesserella parasuis strain SC1401

60.174

99.135

0.597
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.174

92.507

0.594
  recA Vibrio cholerae strain A1552

64.174

92.507

0.594
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.385

94.236

0.588
  recA Acinetobacter baylyi ADP1

63.043

92.795

0.585
  recA Pseudomonas stutzeri DSM 10701

63.125

92.219

0.582
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.312

92.219

0.556

Multiple sequence alignment