Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   QR42_RS08205 Genome accession   NZ_CP010075
Coordinates   1661667..1662917 (+) Length   416 a.a.
NCBI ID   WP_039178717.1    Uniprot ID   -
Organism   Bacillus sp. WP8     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1656667..1667917
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QR42_RS08180 (QR42_08180) - 1658088..1658816 (+) 729 WP_039178709.1 SDR family oxidoreductase -
  QR42_RS08185 (QR42_08185) - 1658890..1659147 (+) 258 WP_024424114.1 DUF3243 domain-containing protein -
  QR42_RS08190 (QR42_08190) - 1659279..1660070 (+) 792 WP_003211480.1 DUF3388 domain-containing protein -
  QR42_RS08195 (QR42_08195) - 1660094..1660993 (+) 900 WP_039178712.1 helix-turn-helix domain-containing protein -
  QR42_RS08200 (QR42_08200) pgsA 1661069..1661650 (+) 582 WP_039178715.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  QR42_RS08205 (QR42_08205) cinA 1661667..1662917 (+) 1251 WP_039178717.1 competence/damage-inducible protein A Machinery gene
  QR42_RS08210 (QR42_08210) recA 1663097..1664140 (+) 1044 WP_039178719.1 recombinase RecA Machinery gene
  QR42_RS08215 (QR42_08215) - 1664283..1665458 (+) 1176 WP_039178720.1 serine hydrolase domain-containing protein -
  QR42_RS08220 (QR42_08220) rny 1665692..1667254 (+) 1563 WP_003211958.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45604.60 Da        Isoelectric Point: 4.6997

>NTDB_id=134045 QR42_RS08205 WP_039178717.1 1661667..1662917(+) (cinA) [Bacillus sp. WP8]
MKSERKAEIIAVGSELLLGQITNTNAQFISKQLAEIGVNVYYHTAVGDNPERLKQAIQVAQERSNFIIFSGGLGPTKDDL
TKETIASTLGKELVLNEEAFESIQDYFRKTGRDMSPNNRKQALVLEGSDVLVNRFGMAPGMFVQEDDTFYILLPGPPSEL
HPMFENEAKPLISEKLGLKEKIVSVVLRFFGIGESQLETDLEDLIDAQTNPTIAPLASDGEVTLRLTAKHEDEKETERLL
KETEAQILARVGEYFYGYGDTSLVREASKALHEHGKTVAAAESLTGGMFSEWLTDLEGASSILNGSVVCYTNQVKQQVLG
CREETLSSYGAVSKECALELAEGVRKLTGSDIGISFTGVAGPDSQEGQPVGKVFIGLSTKDQTDVFEWMFTGSRSGIRKR
AVKYGLHHLLNLLKES

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=134045 QR42_RS08205 WP_039178717.1 1661667..1662917(+) (cinA) [Bacillus sp. WP8]
TTGAAGTCAGAGAGAAAAGCAGAAATTATTGCAGTCGGTTCCGAACTCTTGCTAGGGCAAATTACGAATACGAATGCACA
ATTCATCAGCAAACAACTAGCTGAAATTGGTGTGAATGTTTATTACCACACAGCAGTTGGTGACAATCCAGAGCGTTTAA
AACAGGCCATTCAGGTGGCGCAGGAAAGATCTAATTTTATTATCTTCTCAGGTGGTCTTGGACCAACCAAAGATGACTTA
ACAAAAGAAACAATTGCGAGTACGCTCGGTAAAGAGCTTGTACTAAATGAAGAAGCATTTGAATCGATTCAAGACTACTT
TCGAAAGACCGGCCGCGATATGTCACCGAACAATCGTAAGCAGGCACTCGTTCTAGAAGGATCAGATGTGCTCGTGAACC
GTTTCGGGATGGCCCCAGGTATGTTTGTTCAAGAAGACGATACGTTTTATATACTTCTTCCTGGACCGCCAAGTGAATTG
CACCCGATGTTTGAAAACGAGGCAAAGCCGCTGATTTCTGAGAAGCTTGGCTTAAAGGAAAAAATTGTGTCTGTTGTTCT
GCGCTTCTTCGGAATCGGTGAATCGCAGCTTGAAACAGACCTAGAAGATTTAATTGATGCTCAAACCAACCCGACGATTG
CACCACTCGCATCTGACGGTGAAGTGACGCTAAGGTTGACTGCTAAGCATGAGGATGAAAAAGAAACAGAGCGTCTGTTA
AAAGAAACAGAAGCGCAAATTTTAGCGCGGGTAGGAGAGTACTTCTACGGATATGGGGATACATCGCTTGTCCGCGAAGC
GTCCAAAGCCTTGCACGAGCACGGGAAAACAGTAGCAGCAGCAGAAAGTCTGACTGGTGGAATGTTCTCCGAATGGCTGA
CAGATCTCGAAGGGGCATCATCCATTTTGAACGGAAGTGTGGTTTGTTATACAAACCAAGTAAAGCAGCAGGTACTTGGC
TGCCGGGAGGAAACACTGTCTTCTTATGGTGCTGTCAGCAAAGAGTGCGCTTTAGAGCTTGCTGAAGGGGTTAGAAAGCT
GACCGGAAGTGATATTGGCATTAGCTTTACGGGTGTAGCAGGACCTGATTCCCAAGAGGGTCAGCCTGTTGGAAAAGTAT
TCATTGGATTATCCACGAAAGACCAGACGGACGTGTTTGAATGGATGTTTACGGGCAGCCGGTCGGGCATTCGAAAGCGC
GCTGTGAAATATGGTCTGCATCACTTACTCAACTTATTAAAAGAGAGTTAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(262-412)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Damage-inducible protein CinA KH domain (CinA_KH)

(186-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

75.181

99.76

0.75
  cinA Streptococcus mitis SK321

48.219

100

0.488
  cinA Streptococcus mitis NCTC 12261

47.981

100

0.486
  cinA Streptococcus pneumoniae TIGR4

47.743

100

0.483
  cinA Streptococcus mutans UA159

48.077

100

0.481
  cinA Streptococcus pneumoniae Rx1

47.506

100

0.481
  cinA Streptococcus pneumoniae R6

47.506

100

0.481
  cinA Streptococcus pneumoniae D39

47.268

100

0.478
  cinA Streptococcus suis isolate S10

43.651

90.865

0.397

Multiple sequence alignment