Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   BG07_RS22905 Genome accession   NZ_CP009651
Coordinates   4047262..4048287 (+) Length   341 a.a.
NCBI ID   WP_006095669.1    Uniprot ID   -
Organism   Bacillus pseudomycoides strain BTZ     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4042262..4053287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BG07_RS22875 (BG07_4107) ymfI 4042315..4043028 (+) 714 WP_018782285.1 elongation factor P 5-aminopentanone reductase -
  BG07_RS22880 (BG07_4108) - 4043108..4043356 (+) 249 WP_003199403.1 DUF3243 domain-containing protein -
  BG07_RS22885 (BG07_4109) - 4043493..4044278 (+) 786 WP_016115921.1 DUF3388 domain-containing protein -
  BG07_RS22890 (BG07_4110) - 4044291..4045217 (+) 927 WP_080740049.1 helix-turn-helix domain-containing protein -
  BG07_RS22895 (BG07_4111) pgsA 4045282..4045860 (+) 579 WP_018782283.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  BG07_RS22900 (BG07_4112) cinA 4045881..4047119 (+) 1239 WP_018782282.1 competence/damage-inducible protein A Machinery gene
  BG07_RS22905 (BG07_4113) recA 4047262..4048287 (+) 1026 WP_006095669.1 recombinase RecA Machinery gene
  BG07_RS22910 (BG07_4114) rny 4048719..4050287 (+) 1569 WP_016115916.1 ribonuclease Y -
  BG07_RS22915 (BG07_4115) - 4050470..4051264 (+) 795 WP_003199419.1 TIGR00282 family metallophosphoesterase -
  BG07_RS22920 (BG07_4116) spoVS 4051414..4051674 (+) 261 WP_000404341.1 stage V sporulation protein SpoVS -
  BG07_RS22925 (BG07_4117) - 4051698..4052660 (+) 963 WP_003199421.1 dipeptidase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37110.26 Da        Isoelectric Point: 5.0828

>NTDB_id=131009 BG07_RS22905 WP_006095669.1 4047262..4048287(+) (recA) [Bacillus pseudomycoides strain BTZ]
MSDRQAALDMALKQIEKQFGKGSIMKLGEQAERRISTIPSGSLALDVALGVGGYPRGRVIEIYGPESSGKTTVSLHAIAE
VQRQGGQAAFIDAEHAMDPVYAQKLGVNIDELLLSQPDTGEQGLEIAEALVRSGAIDIIVIDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRAEQLKQGNDIVGNKT
KIKVVKNKVAPPFRVAEVDIMYGEGISREGEILDMASELDIVQKSGAWYSYNEERLGQGRENAKQFLKENPELRDEIAFF
IREHHGIGEDSGNLEEGAILD

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=131009 BG07_RS22905 WP_006095669.1 4047262..4048287(+) (recA) [Bacillus pseudomycoides strain BTZ]
ATGAGTGATCGTCAAGCGGCATTAGATATGGCGTTAAAACAAATAGAGAAGCAATTTGGTAAAGGTTCCATTATGAAATT
AGGAGAACAGGCAGAACGTAGAATTTCTACAATTCCAAGTGGTTCATTAGCACTTGATGTAGCTTTAGGTGTTGGTGGTT
ACCCGCGCGGACGTGTTATCGAAATCTATGGACCTGAAAGCTCAGGTAAAACAACGGTTTCCTTACATGCGATTGCAGAA
GTGCAACGTCAAGGTGGACAAGCAGCATTTATTGATGCAGAACATGCAATGGATCCTGTATATGCACAAAAATTGGGTGT
TAATATTGATGAGTTACTATTATCACAGCCTGATACAGGAGAACAAGGTCTAGAAATTGCAGAAGCTTTAGTACGAAGCG
GTGCAATTGATATTATCGTAATTGACTCTGTAGCGGCTCTTGTACCAAAAGCGGAAATCGAAGGAGAAATGGGTGACTCT
CACGTCGGTTTACAAGCACGTCTAATGTCACAAGCACTTCGTAAGCTTTCCGGTGCGATTAACAAATCAAAAACAATTGC
AATCTTTATTAACCAAATTCGTGAAAAAGTTGGGGTTATGTTCGGGAACCCAGAAACAACTCCAGGTGGTCGTGCGTTGA
AATTCTATTCAACAGTTCGTCTTGAAGTGCGTCGCGCTGAGCAATTAAAGCAAGGTAATGATATTGTTGGTAACAAAACA
AAAATAAAAGTAGTGAAAAATAAAGTAGCACCTCCTTTCCGTGTTGCTGAAGTTGATATTATGTACGGAGAAGGGATTTC
AAGAGAAGGCGAAATTTTAGATATGGCTTCTGAACTTGATATCGTTCAAAAAAGTGGTGCTTGGTATTCTTATAATGAAG
AACGTTTAGGACAAGGGCGCGAAAATGCAAAACAATTCTTAAAAGAAAATCCAGAATTAAGAGATGAAATTGCATTCTTT
ATTCGTGAACATCATGGTATTGGTGAAGATTCTGGAAACTTAGAAGAAGGTGCTATTCTAGATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

87.768

95.894

0.842
  recA Latilactobacillus sakei subsp. sakei 23K

75.841

95.894

0.727
  recA Streptococcus mutans UA159

68.343

99.12

0.677
  recA Streptococcus pneumoniae Rx1

69.394

96.774

0.672
  recA Streptococcus mitis NCTC 12261

69.394

96.774

0.672
  recA Streptococcus pneumoniae D39

69.394

96.774

0.672
  recA Streptococcus pneumoniae R6

69.394

96.774

0.672
  recA Streptococcus pneumoniae TIGR4

69.394

96.774

0.672
  recA Streptococcus pyogenes NZ131

69.817

96.188

0.672
  recA Streptococcus mitis SK321

69.091

96.774

0.669
  recA Lactococcus lactis subsp. cremoris KW2

67.066

97.947

0.657
  recA Neisseria gonorrhoeae strain FA1090

65.644

95.601

0.628
  recA Neisseria gonorrhoeae MS11

65.644

95.601

0.628
  recA Neisseria gonorrhoeae MS11

65.644

95.601

0.628
  recA Ralstonia pseudosolanacearum GMI1000

67.732

91.789

0.622
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.804

95.601

0.61
  recA Helicobacter pylori 26695

62.918

96.481

0.607
  recA Helicobacter pylori strain NCTC11637

62.918

96.481

0.607
  recA Vibrio cholerae strain A1552

64.174

94.135

0.604
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.174

94.135

0.604
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.08

95.894

0.595
  recA Glaesserella parasuis strain SC1401

63.636

93.548

0.595
  recA Acinetobacter baumannii D1279779

62.422

94.428

0.589
  recA Acinetobacter baylyi ADP1

62.422

94.428

0.589
  recA Pseudomonas stutzeri DSM 10701

62.5

93.842

0.587
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.076

92.669

0.566

Multiple sequence alignment