Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   BG07_RS22900 Genome accession   NZ_CP009651
Coordinates   4045881..4047119 (+) Length   412 a.a.
NCBI ID   WP_018782282.1    Uniprot ID   -
Organism   Bacillus pseudomycoides strain BTZ     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 4040881..4052119
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BG07_RS22875 (BG07_4107) ymfI 4042315..4043028 (+) 714 WP_018782285.1 elongation factor P 5-aminopentanone reductase -
  BG07_RS22880 (BG07_4108) - 4043108..4043356 (+) 249 WP_003199403.1 DUF3243 domain-containing protein -
  BG07_RS22885 (BG07_4109) - 4043493..4044278 (+) 786 WP_016115921.1 DUF3388 domain-containing protein -
  BG07_RS22890 (BG07_4110) - 4044291..4045217 (+) 927 WP_080740049.1 helix-turn-helix domain-containing protein -
  BG07_RS22895 (BG07_4111) pgsA 4045282..4045860 (+) 579 WP_018782283.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  BG07_RS22900 (BG07_4112) cinA 4045881..4047119 (+) 1239 WP_018782282.1 competence/damage-inducible protein A Machinery gene
  BG07_RS22905 (BG07_4113) recA 4047262..4048287 (+) 1026 WP_006095669.1 recombinase RecA Machinery gene
  BG07_RS22910 (BG07_4114) rny 4048719..4050287 (+) 1569 WP_016115916.1 ribonuclease Y -
  BG07_RS22915 (BG07_4115) - 4050470..4051264 (+) 795 WP_003199419.1 TIGR00282 family metallophosphoesterase -
  BG07_RS22920 (BG07_4116) spoVS 4051414..4051674 (+) 261 WP_000404341.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 412 a.a.        Molecular weight: 45669.21 Da        Isoelectric Point: 6.2403

>NTDB_id=131008 BG07_RS22900 WP_018782282.1 4045881..4047119(+) (cinA) [Bacillus pseudomycoides strain BTZ]
MNAEIIAVGTELLLGQITNTNAKFLSEKLASIGINVYYHTVVGDNNHRLQEAIQIAEKRADILIFTGGLGPTKDDLTKET
IASTLQEELVYDEEALTSIGEYFKRTGREFTENNKKQALVLKGSTVFANDHGMAPGMGLAKNQKVYILLPGPPKEMKPMY
TSYVEPFLRNFTTEEHIYSRVLRFFGIGESQLEVKVQDLIDGQTNPTIAPLASDGEVTLRLTVKHHDVKHAEVLIQHIED
LILERVGEFFYGYNQDFLHNKAIDLLKKKALTLACAESLTGGLFGNQVTENAGVSSVFKGGVICYHNDVKQHVLQVPEET
LQTVGAVSEQCARYLAENVKTLLKADIGISFTGVAGPGASENKEPGTVFVGLAIKNEPTFVFPLKLSGSRQQIRERSVKY
GFYHLYKKLEEM

Nucleotide


Download         Length: 1239 bp        

>NTDB_id=131008 BG07_RS22900 WP_018782282.1 4045881..4047119(+) (cinA) [Bacillus pseudomycoides strain BTZ]
ATGAATGCCGAAATTATTGCGGTTGGAACAGAATTGTTACTCGGGCAAATTACAAATACAAATGCGAAGTTTTTATCTGA
AAAGTTAGCTTCCATCGGAATTAATGTGTATTATCATACGGTTGTAGGTGATAATAATCATCGTTTACAAGAAGCAATTC
AAATTGCTGAGAAGCGTGCAGATATACTTATTTTTACTGGTGGATTAGGACCGACAAAAGATGATTTAACGAAAGAAACA
ATTGCTTCAACCTTACAAGAAGAACTTGTTTATGATGAAGAGGCTTTAACGTCAATTGGCGAGTATTTTAAACGTACAGG
ACGCGAATTCACAGAAAATAATAAGAAACAAGCACTTGTTTTGAAAGGATCGACTGTATTTGCAAATGATCATGGTATGG
CACCGGGTATGGGGCTAGCTAAGAACCAGAAGGTTTATATTTTATTACCGGGCCCGCCAAAAGAAATGAAACCGATGTAT
ACAAGCTACGTAGAGCCGTTTTTACGTAACTTTACAACTGAAGAGCATATATATTCCCGTGTTCTTCGTTTTTTCGGCAT
TGGAGAATCCCAACTGGAAGTGAAAGTTCAAGACTTAATTGATGGGCAAACGAATCCAACAATTGCTCCGCTAGCTTCAG
ATGGAGAAGTAACGCTTCGTTTGACCGTTAAACACCATGATGTAAAGCATGCGGAAGTGTTAATTCAACATATAGAAGAT
TTGATTTTAGAACGAGTAGGGGAGTTTTTCTACGGATATAATCAAGATTTTCTTCATAATAAAGCGATTGATTTATTGAA
GAAAAAAGCTTTAACTTTAGCGTGTGCAGAAAGTTTAACAGGCGGTCTGTTTGGAAATCAAGTAACAGAAAATGCCGGCG
TATCTTCTGTTTTTAAAGGCGGCGTGATTTGCTATCATAACGATGTGAAACAACATGTTTTACAAGTGCCTGAAGAAACC
TTACAAACAGTCGGTGCTGTTAGCGAACAATGTGCTCGTTATCTTGCTGAAAATGTAAAGACACTATTGAAGGCGGATAT
TGGGATTAGCTTTACTGGAGTGGCAGGACCGGGTGCTTCGGAAAATAAAGAGCCTGGTACTGTTTTTGTAGGTTTAGCGA
TAAAGAATGAACCAACGTTTGTTTTTCCTCTTAAATTAAGTGGAAGTCGTCAGCAAATTCGAGAACGCTCTGTGAAATAT
GGATTTTATCATTTATACAAAAAACTAGAAGAGATGTGA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(179-252)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(258-408)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

57.561

99.515

0.573
  cinA Streptococcus mitis SK321

45.346

100

0.461
  cinA Streptococcus pneumoniae TIGR4

44.869

100

0.456
  cinA Streptococcus mutans UA159

45.813

98.544

0.451
  cinA Streptococcus mitis NCTC 12261

44.391

100

0.451
  cinA Streptococcus pneumoniae Rx1

44.391

100

0.451
  cinA Streptococcus pneumoniae R6

44.391

100

0.451
  cinA Streptococcus pneumoniae D39

44.153

100

0.449
  cinA Streptococcus suis isolate S10

40.053

91.505

0.367

Multiple sequence alignment