Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   PLANO_RS09510 Genome accession   NZ_CP009129
Coordinates   1870588..1871649 (-) Length   353 a.a.
NCBI ID   WP_038704221.1    Uniprot ID   A0A0B4RC94
Organism   Planococcus sp. PAMC 21323     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1865588..1876649
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PLANO_RS09495 (Plano_1855) - 1867116..1867544 (-) 429 WP_038704218.1 RicAFT regulatory complex protein RicA family protein -
  PLANO_RS09500 (Plano_1856) - 1867867..1868664 (-) 798 WP_038704219.1 TIGR00282 family metallophosphoesterase -
  PLANO_RS09505 (Plano_1857) rny 1868731..1870290 (-) 1560 WP_038704220.1 ribonuclease Y -
  PLANO_RS09510 (Plano_1858) recA 1870588..1871649 (-) 1062 WP_038704221.1 recombinase RecA Machinery gene
  PLANO_RS09515 (Plano_1859) cinA 1871824..1873077 (-) 1254 WP_038704222.1 competence/damage-inducible protein A Machinery gene
  PLANO_RS09520 (Plano_1860) pgsA 1873102..1873680 (-) 579 WP_038704223.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  PLANO_RS09525 (Plano_1861) - 1873730..1874590 (-) 861 WP_038704224.1 RodZ domain-containing protein -
  PLANO_RS09530 (Plano_1862) - 1874608..1875408 (-) 801 WP_038704225.1 YmfK family protein -
  PLANO_RS09535 (Plano_1863) - 1875516..1876235 (-) 720 WP_038704226.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 38221.42 Da        Isoelectric Point: 5.0874

>NTDB_id=127031 PLANO_RS09510 WP_038704221.1 1870588..1871649(-) (recA) [Planococcus sp. PAMC 21323]
MSDRKAALDMALKQIEKQFGKGSVMKLGEKTDRNISSVSSGSLALDTALGIGGYPRGRVIEVYGPESSGKTTVSLHAIAE
VQATGGTAAFIDAEHALDPVYAKNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIVVVDSVAALVPKAEIEGEMGDS
HMGLQARLMSQALRKLSGVINKSNTIVIFINQIREKIGVMFGNPETTPGGRALKFYSSVRLEVRRAEALKSGTEIIGNRT
KIKVVKNKVAPPFRTAEVDIMYGKGISREGEIVDIGSDLEIIQKSGSWYSYNEERIGQGRENVKQFLLKNPEIRNEISNK
IRESYGMAAATYTIAGSKEESEDFNLLLDEDDN

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=127031 PLANO_RS09510 WP_038704221.1 1870588..1871649(-) (recA) [Planococcus sp. PAMC 21323]
TTGAGCGATCGTAAAGCAGCATTAGATATGGCGTTAAAACAAATAGAAAAGCAATTTGGTAAAGGTTCTGTCATGAAATT
GGGGGAAAAAACCGACCGAAATATATCATCCGTTTCGAGTGGTTCATTAGCATTGGATACAGCGCTAGGAATAGGCGGTT
ATCCGCGAGGACGTGTCATTGAAGTGTACGGTCCTGAGAGTTCTGGTAAAACAACAGTTTCTCTTCACGCAATTGCAGAA
GTACAAGCTACGGGCGGAACAGCTGCCTTTATCGATGCAGAGCATGCATTAGATCCAGTTTATGCAAAAAATCTTGGTGT
AAATATTGATGAGTTGTTGTTGTCTCAACCGGATACAGGTGAGCAAGCACTTGAAATCGCTGAAGCACTTGTTCGTAGTG
GAGCAGTTGATATTGTCGTAGTCGATTCAGTAGCAGCATTAGTTCCCAAAGCAGAAATTGAAGGCGAAATGGGCGATTCA
CATATGGGATTACAAGCGCGTTTAATGTCTCAAGCCCTGCGCAAATTATCTGGTGTTATTAACAAGTCCAATACAATTGT
TATTTTCATTAACCAAATCCGTGAGAAGATTGGTGTAATGTTTGGTAACCCGGAAACAACACCTGGTGGTCGTGCGTTGA
AATTCTATTCATCTGTTCGTTTAGAAGTTCGCCGTGCAGAAGCATTGAAATCAGGAACTGAAATCATCGGTAACAGAACA
AAGATTAAAGTTGTTAAAAATAAAGTAGCTCCACCGTTCCGTACAGCTGAAGTTGATATCATGTATGGAAAAGGAATTTC
ACGAGAAGGTGAAATTGTCGACATCGGATCTGATTTAGAGATTATTCAAAAGAGCGGTTCGTGGTATTCATATAACGAAG
AACGAATCGGTCAAGGTCGTGAAAATGTTAAGCAATTCTTGCTTAAAAATCCAGAAATCCGCAATGAGATTTCTAATAAA
ATCCGTGAATCATATGGTATGGCAGCAGCAACGTACACAATTGCTGGTAGTAAGGAAGAGTCAGAAGACTTTAATCTTCT
ACTTGACGAAGACGATAATTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B4RC94

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

84.709

92.635

0.785
  recA Latilactobacillus sakei subsp. sakei 23K

70.977

98.584

0.7
  recA Streptococcus mutans UA159

66.944

100

0.683
  recA Streptococcus pyogenes NZ131

65.915

100

0.663
  recA Streptococcus mitis NCTC 12261

66.97

93.484

0.626
  recA Streptococcus mitis SK321

66.97

93.484

0.626
  recA Streptococcus pneumoniae Rx1

66.97

93.484

0.626
  recA Streptococcus pneumoniae D39

66.97

93.484

0.626
  recA Streptococcus pneumoniae R6

66.97

93.484

0.626
  recA Streptococcus pneumoniae TIGR4

66.97

93.484

0.626
  recA Neisseria gonorrhoeae MS11

64.244

97.45

0.626
  recA Neisseria gonorrhoeae MS11

64.244

97.45

0.626
  recA Neisseria gonorrhoeae strain FA1090

64.244

97.45

0.626
  recA Acinetobacter baylyi ADP1

64.431

97.167

0.626
  recA Lactococcus lactis subsp. cremoris KW2

65.152

93.484

0.609
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.549

92.918

0.609
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.422

96.034

0.609
  recA Acinetobacter baumannii D1279779

62.209

97.45

0.606
  recA Ralstonia pseudosolanacearum GMI1000

68.051

88.669

0.603
  recA Glaesserella parasuis strain SC1401

66.355

90.935

0.603
  recA Vibrio cholerae strain A1552

65.109

90.935

0.592
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.109

90.935

0.592
  recA Pseudomonas stutzeri DSM 10701

65.312

90.652

0.592
  recA Helicobacter pylori strain NCTC11637

64

92.068

0.589
  recA Helicobacter pylori 26695

64

92.068

0.589
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.25

90.652

0.555

Multiple sequence alignment