Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   PLANO_RS09515 Genome accession   NZ_CP009129
Coordinates   1871824..1873077 (-) Length   417 a.a.
NCBI ID   WP_038704222.1    Uniprot ID   -
Organism   Planococcus sp. PAMC 21323     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1866824..1878077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PLANO_RS09495 (Plano_1855) - 1867116..1867544 (-) 429 WP_038704218.1 RicAFT regulatory complex protein RicA family protein -
  PLANO_RS09500 (Plano_1856) - 1867867..1868664 (-) 798 WP_038704219.1 TIGR00282 family metallophosphoesterase -
  PLANO_RS09505 (Plano_1857) rny 1868731..1870290 (-) 1560 WP_038704220.1 ribonuclease Y -
  PLANO_RS09510 (Plano_1858) recA 1870588..1871649 (-) 1062 WP_038704221.1 recombinase RecA Machinery gene
  PLANO_RS09515 (Plano_1859) cinA 1871824..1873077 (-) 1254 WP_038704222.1 competence/damage-inducible protein A Machinery gene
  PLANO_RS09520 (Plano_1860) pgsA 1873102..1873680 (-) 579 WP_038704223.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  PLANO_RS09525 (Plano_1861) - 1873730..1874590 (-) 861 WP_038704224.1 RodZ domain-containing protein -
  PLANO_RS09530 (Plano_1862) - 1874608..1875408 (-) 801 WP_038704225.1 YmfK family protein -
  PLANO_RS09535 (Plano_1863) - 1875516..1876235 (-) 720 WP_038704226.1 SDR family oxidoreductase -
  PLANO_RS09540 (Plano_1864) - 1876232..1877533 (-) 1302 WP_038704227.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 417 a.a.        Molecular weight: 45509.72 Da        Isoelectric Point: 4.8065

>NTDB_id=127032 PLANO_RS09515 WP_038704222.1 1871824..1873077(-) (cinA) [Planococcus sp. PAMC 21323]
MNAEIIAVGSELLLGQITNTNARFLSNHLAELGINVYYHTVVGDNPARLEDAIKIAENRADLILFTGGLGPTKDDLTKEA
IARHLDTSLETNTEALDSIVAFFERAGRPMTENNKKQAWVLKDSEVLVNHNGMAPGMMYKKDERVYILLPGPPKEMEPMF
QFEAKPKLASLLNKADVILSHVLRFYGIGEAELEDRLHHILDKQTNPTIAPLAADGEVTLRITAKTNTTDEAWQLINGAK
EEILDVVGDYLYGYDNDSLSSKVVELLKNQGKTISAAESLTAGLFQSELASVPGASAVLAGGVITYNEEMKVHQLGLSAE
LLAEYGVVSEQTALAMAEAVRDKFKTDISVSLTGAAGPDAHGDQPAGTVWIGIATEEQTTSYRLQLSGMRNTNRLRAVKL
ALYYVIRTLTEDNARKI

Nucleotide


Download         Length: 1254 bp        

>NTDB_id=127032 PLANO_RS09515 WP_038704222.1 1871824..1873077(-) (cinA) [Planococcus sp. PAMC 21323]
ATGAACGCAGAAATCATTGCGGTAGGTTCAGAATTACTATTAGGTCAAATCACCAATACAAATGCTCGATTTTTGTCTAA
TCATTTAGCAGAGCTTGGTATTAATGTGTATTATCATACGGTAGTTGGAGACAACCCGGCTCGGTTAGAAGATGCTATTA
AAATTGCAGAAAATCGTGCTGACCTCATCTTATTTACTGGTGGGTTAGGACCAACAAAAGATGACTTAACAAAAGAGGCA
ATTGCTCGTCATTTAGATACGTCACTTGAGACGAATACAGAAGCCTTAGATTCAATCGTTGCATTTTTTGAACGCGCAGG
TCGACCGATGACGGAGAATAACAAAAAACAAGCATGGGTTTTAAAAGACAGTGAAGTTCTTGTTAACCATAATGGTATGG
CTCCGGGCATGATGTACAAGAAAGATGAGCGTGTGTATATTTTACTTCCAGGACCCCCTAAAGAAATGGAGCCGATGTTC
CAATTTGAGGCAAAACCTAAGCTTGCAAGTTTATTGAACAAAGCCGATGTTATTTTGTCTCATGTTTTGCGCTTTTATGG
AATCGGCGAGGCGGAGCTTGAAGATCGTTTACACCATATTCTTGACAAACAAACGAACCCAACAATTGCACCACTTGCGG
CTGATGGTGAAGTGACTTTACGTATTACCGCTAAAACTAATACTACTGATGAAGCATGGCAGTTAATCAATGGCGCTAAA
GAAGAAATTTTGGATGTCGTAGGCGATTACCTTTACGGTTACGATAATGACTCGCTGTCTTCTAAAGTAGTAGAGCTCTT
GAAAAATCAAGGCAAAACTATTTCGGCAGCAGAGAGCTTGACTGCTGGACTTTTCCAATCTGAATTAGCCTCAGTGCCTG
GAGCAAGTGCAGTATTAGCTGGTGGAGTCATTACTTATAATGAAGAAATGAAAGTTCATCAGCTTGGCTTATCAGCAGAA
TTACTTGCTGAATATGGCGTTGTCAGTGAACAAACAGCATTGGCTATGGCAGAAGCAGTGCGAGATAAATTTAAAACTGA
TATAAGTGTATCCTTAACAGGAGCAGCTGGACCTGATGCACATGGGGATCAACCAGCAGGAACTGTTTGGATAGGTATAG
CAACAGAAGAGCAAACTACTTCTTATCGCCTTCAGCTATCCGGAATGCGCAATACCAATCGTTTAAGAGCTGTTAAACTC
GCTTTATATTATGTCATTCGAACTTTAACTGAAGATAATGCACGCAAAATTTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(257-408)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

50.611

98.082

0.496
  cinA Streptococcus mutans UA159

46.394

99.76

0.463
  cinA Streptococcus mitis SK321

45.498

100

0.46
  cinA Streptococcus mitis NCTC 12261

45.261

100

0.458
  cinA Streptococcus pneumoniae Rx1

44.811

100

0.456
  cinA Streptococcus pneumoniae R6

44.811

100

0.456
  cinA Streptococcus pneumoniae TIGR4

44.787

100

0.453
  cinA Streptococcus pneumoniae D39

44.575

100

0.453
  cinA Streptococcus suis isolate S10

39.031

94.005

0.367

Multiple sequence alignment