Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DR75_RS10210 Genome accession   NZ_CP008816
Coordinates   1931372..1932193 (-) Length   273 a.a.
NCBI ID   WP_407854621.1    Uniprot ID   -
Organism   Enterococcus faecalis ATCC 29212     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1926372..1937193
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DR75_RS10195 (DR75_1883) - 1927779..1928150 (-) 372 WP_002354866.1 RicAFT regulatory complex protein RicA family protein -
  DR75_RS10200 (DR75_1884) - 1928238..1929035 (-) 798 WP_002354864.1 TIGR00282 family metallophosphoesterase -
  DR75_RS10205 (DR75_1885) rny 1929195..1930751 (-) 1557 WP_002354863.1 ribonuclease Y -
  DR75_RS16865 recA 1931148..1931429 (-) 282 WP_407854620.1 hypothetical protein Machinery gene
  DR75_RS10210 (DR75_1886) recA 1931372..1932193 (-) 822 WP_407854621.1 recombinase RecA Machinery gene
  DR75_RS10215 (DR75_1888) cinA 1932307..1933551 (-) 1245 WP_002354857.1 competence/damage-inducible protein A Machinery gene
  DR75_RS10220 (DR75_1889) - 1933743..1934942 (+) 1200 WP_002354856.1 hypothetical protein -
  DR75_RS10225 (DR75_1890) - 1935022..1935651 (-) 630 WP_002354854.1 NAD(P)-dependent oxidoreductase -
  DR75_RS10230 (DR75_1891) - 1935710..1936135 (-) 426 WP_002383201.1 Rrf2 family transcriptional regulator -
  DR75_RS10235 (DR75_1892) - 1936224..1936607 (-) 384 WP_002354850.1 YccF domain-containing protein -

Sequence

Protein


Download         Length: 273 a.a.        Molecular weight: 29429.03 Da        Isoelectric Point: 10.1279

>NTDB_id=124467 DR75_RS10210 WP_407854621.1 1931372..1932193(-) (recA) [Enterococcus faecalis ATCC 29212]
MADDRKVALDAALKKIEKNFGKGSIMKLGEKADQKISTIPSGSLALDVALGVGGYPRGRIIEVYGPESSGKTTVSLHAIA
EVQRNGGTAAFIDAEHALDPQYAEKLGVNIDELLLSQPDTGEQGLEIADALVSSGAIDIVVIDSVAALVPRAEIDGEMGA
SHVGLQARLMSQALRKLSGSINKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYATVRLEVRRAEQLKQGTDIVGNR
TKLKSLKTKWRHHLKWQKLISCMAKGFPKKANY

Nucleotide


Download         Length: 822 bp        

>NTDB_id=124467 DR75_RS10210 WP_407854621.1 1931372..1932193(-) (recA) [Enterococcus faecalis ATCC 29212]
TTGGCAGATGATCGTAAAGTGGCTTTAGATGCCGCACTGAAAAAAATTGAAAAGAACTTTGGGAAAGGCTCTATTATGAA
ATTAGGCGAAAAAGCTGATCAAAAAATTTCAACTATCCCTAGTGGTTCTTTAGCGTTAGATGTTGCATTGGGCGTAGGTG
GGTATCCACGTGGCCGAATTATTGAAGTATATGGTCCTGAGAGTTCAGGTAAAACAACTGTTTCTTTACACGCAATTGCA
GAAGTGCAACGAAATGGTGGAACAGCCGCTTTTATCGATGCTGAGCATGCATTGGATCCTCAATATGCGGAGAAACTAGG
CGTTAACATTGATGAATTACTTTTATCTCAACCAGATACGGGCGAGCAAGGCTTAGAGATTGCCGATGCCTTAGTTTCAA
GTGGTGCGATTGACATCGTTGTCATCGACTCGGTTGCTGCGTTAGTTCCTCGTGCAGAGATTGATGGTGAGATGGGAGCG
AGCCATGTCGGCTTACAAGCTCGACTAATGTCTCAAGCACTACGTAAATTATCAGGCTCAATTAATAAGACAAAAACAAT
TGCTATTTTCATTAACCAAATTCGTGAAAAAGTTGGCGTGATGTTCGGAAATCCTGAAACAACTCCTGGTGGACGTGCAT
TGAAATTCTACGCAACGGTTCGTCTAGAAGTCCGTCGTGCAGAACAGTTAAAACAAGGAACAGACATCGTCGGTAACCGC
ACAAAATTAAAGTCGTTAAAAACAAAGTGGCGCCACCATTTAAAGTGGCAGAAGTTGATATCATGTATGGCCAAGGGATT
TCCCAAGAAGGCGAATTACTAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

84.146

90.11

0.758
  recA Latilactobacillus sakei subsp. sakei 23K

76.03

97.802

0.744
  recA Streptococcus mitis NCTC 12261

74

91.575

0.678
  recA Streptococcus pneumoniae D39

74

91.575

0.678
  recA Streptococcus pneumoniae R6

74

91.575

0.678
  recA Streptococcus pneumoniae TIGR4

74

91.575

0.678
  recA Streptococcus mitis SK321

74

91.575

0.678
  recA Streptococcus pneumoniae Rx1

74

91.575

0.678
  recA Streptococcus pyogenes NZ131

72.727

92.674

0.674
  recA Streptococcus mutans UA159

72.332

92.674

0.67
  recA Lactococcus lactis subsp. cremoris KW2

70.8

91.575

0.648
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.921

97.802

0.615
  recA Acinetobacter baumannii D1279779

64.314

93.407

0.601
  recA Vibrio cholerae strain A1552

60.741

98.901

0.601
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.741

98.901

0.601
  recA Neisseria gonorrhoeae strain FA1090

65.2

91.575

0.597
  recA Neisseria gonorrhoeae MS11

65.2

91.575

0.597
  recA Neisseria gonorrhoeae MS11

65.2

91.575

0.597
  recA Acinetobacter baylyi ADP1

64.8

91.575

0.593
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.122

89.744

0.593
  recA Pseudomonas stutzeri DSM 10701

63.454

91.209

0.579
  recA Glaesserella parasuis strain SC1401

64.854

87.546

0.568
  recA Helicobacter pylori 26695

62.097

90.842

0.564
  recA Helicobacter pylori strain NCTC11637

62.097

90.842

0.564
  recA Ralstonia pseudosolanacearum GMI1000

67.699

82.784

0.56
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.656

88.278

0.553

Multiple sequence alignment