Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   KHU1_RS07700 Genome accession   NZ_CP007242
Coordinates   1546983..1548026 (+) Length   347 a.a.
NCBI ID   WP_042635205.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens KHG19     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1541983..1553026
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHU1_RS07670 (KHU1_1489) ymfI 1541992..1542720 (+) 729 WP_038463882.1 elongation factor P 5-aminopentanone reductase -
  KHU1_RS07675 (KHU1_1490) - 1542796..1543053 (+) 258 WP_003154150.1 DUF3243 domain-containing protein -
  KHU1_RS07680 (KHU1_1491) - 1543181..1543972 (+) 792 WP_007409819.1 DUF3388 domain-containing protein -
  KHU1_RS07685 (KHU1_1492) - 1543991..1544890 (+) 900 WP_042635203.1 helix-turn-helix domain-containing protein -
  KHU1_RS07690 (KHU1_1493) pgsA 1544963..1545544 (+) 582 WP_007409821.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  KHU1_RS07695 (KHU1_1494) cinA 1545562..1546812 (+) 1251 WP_042635204.1 competence/damage-inducible protein A Machinery gene
  KHU1_RS07700 (KHU1_1495) recA 1546983..1548026 (+) 1044 WP_042635205.1 recombinase RecA Machinery gene
  KHU1_RS07705 (KHU1_1496) - 1548193..1549374 (+) 1182 WP_007409824.1 serine hydrolase domain-containing protein -
  KHU1_RS07710 (KHU1_1497) rny 1549667..1551226 (+) 1560 WP_003154140.1 ribonuclease Y -
  KHU1_RS07715 (KHU1_1498) - 1551287..1552081 (+) 795 WP_003154137.1 TIGR00282 family metallophosphoesterase -
  KHU1_RS07720 (KHU1_1499) spoVS 1552281..1552541 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37906.08 Da        Isoelectric Point: 4.7494

>NTDB_id=118139 KHU1_RS07700 WP_042635205.1 1546983..1548026(+) (recA) [Bacillus amyloliquefaciens KHG19]
MSDRQAALDMALKQIEKQFGKGSIMKLGEKTDTRISTVPSGSLALDTALGIGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQEKGGQAAFIDAEHALDPVYAQKLGVNIEELLLSQPDTGEQALEIAEALVRSGAVDIVVVDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDVMGNKT
RIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIIDLGTELDIVQKSGSWYSYEEERLGQGRENAKQFLKENKDIMLMIQEQ
IREHYGLDSNGVTDKAEETQEEMELEE

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=118139 KHU1_RS07700 WP_042635205.1 1546983..1548026(+) (recA) [Bacillus amyloliquefaciens KHG19]
ATGAGTGATCGTCAGGCAGCCTTAGATATGGCTCTTAAGCAAATAGAAAAACAATTCGGCAAAGGTTCCATCATGAAGCT
CGGAGAAAAAACGGATACAAGAATTTCAACGGTGCCAAGCGGTTCCCTTGCACTTGATACCGCTCTCGGAATAGGCGGAT
ACCCGCGCGGACGGATTATTGAAGTATACGGACCTGAAAGCTCAGGTAAAACGACTGTAGCGCTTCACGCAATCGCTGAG
GTTCAGGAAAAAGGCGGACAGGCAGCATTTATTGATGCTGAGCATGCTCTTGATCCTGTTTACGCGCAAAAGCTCGGTGT
CAATATCGAAGAGCTTCTGCTTTCTCAGCCGGATACGGGAGAGCAGGCGCTAGAGATTGCTGAAGCGCTGGTGCGAAGCG
GAGCTGTTGATATCGTAGTCGTTGACTCTGTTGCGGCGCTTGTTCCAAAAGCTGAAATTGAAGGTGACATGGGTGATTCA
CACGTCGGTTTACAGGCGCGTCTCATGTCTCAGGCGCTCCGTAAGCTTTCCGGCGCCATCAATAAATCTAAAACAATCGC
AATCTTTATTAACCAGATTCGTGAAAAAGTCGGCGTTATGTTCGGAAATCCGGAGACGACACCGGGCGGCCGCGCGCTGA
AATTCTATTCTTCCGTGCGCCTTGAAGTGCGCCGTGCCGAGCAATTAAAGCAGGGCAACGACGTGATGGGGAATAAAACG
AGAATTAAAGTCGTAAAAAACAAAGTCGCTCCTCCGTTCCGTACGGCTGAAGTGGACATTATGTACGGTGAAGGAATCTC
CAAAGAAGGGGAAATCATCGACCTTGGAACTGAACTGGATATCGTGCAAAAAAGCGGTTCGTGGTATTCTTATGAAGAAG
AACGCCTCGGTCAGGGCCGTGAAAATGCCAAGCAGTTCTTAAAAGAAAATAAAGACATCATGCTGATGATTCAGGAACAA
ATCCGTGAACATTACGGTTTAGACAGTAACGGTGTAACGGACAAAGCGGAAGAAACTCAGGAAGAGATGGAATTAGAAGA
ATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

97.126

100

0.974
  recA Latilactobacillus sakei subsp. sakei 23K

75.385

93.66

0.706
  recA Streptococcus mutans UA159

66.092

100

0.663
  recA Streptococcus pneumoniae Rx1

66.185

99.712

0.66
  recA Streptococcus pneumoniae D39

66.185

99.712

0.66
  recA Streptococcus pneumoniae R6

66.185

99.712

0.66
  recA Streptococcus pneumoniae TIGR4

66.185

99.712

0.66
  recA Streptococcus mitis NCTC 12261

68.485

95.101

0.651
  recA Streptococcus mitis SK321

68.182

95.101

0.648
  recA Streptococcus pyogenes NZ131

67.378

94.524

0.637
  recA Neisseria gonorrhoeae strain FA1090

63.636

98.271

0.625
  recA Neisseria gonorrhoeae MS11

63.636

98.271

0.625
  recA Neisseria gonorrhoeae MS11

63.636

98.271

0.625
  recA Lactococcus lactis subsp. cremoris KW2

65.455

95.101

0.622
  recA Helicobacter pylori 26695

62.974

98.847

0.622
  recA Helicobacter pylori strain NCTC11637

62.974

98.847

0.622
  recA Ralstonia pseudosolanacearum GMI1000

64.329

94.524

0.608
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.609

94.236

0.599
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.609

94.236

0.599
  recA Glaesserella parasuis strain SC1401

60.29

99.424

0.599
  recA Acinetobacter baylyi ADP1

60

99.424

0.597
  recA Vibrio cholerae strain A1552

64.174

92.507

0.594
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.174

92.507

0.594
  recA Acinetobacter baumannii D1279779

59.42

99.424

0.591
  recA Pseudomonas stutzeri DSM 10701

63.125

92.219

0.582
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.372

93.084

0.562

Multiple sequence alignment