Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   KHU1_RS07695 Genome accession   NZ_CP007242
Coordinates   1545562..1546812 (+) Length   416 a.a.
NCBI ID   WP_042635204.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens KHG19     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1540562..1551812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHU1_RS07665 (KHU1_1488) yfmH 1540646..1541932 (+) 1287 WP_038463879.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  KHU1_RS07670 (KHU1_1489) ymfI 1541992..1542720 (+) 729 WP_038463882.1 elongation factor P 5-aminopentanone reductase -
  KHU1_RS07675 (KHU1_1490) - 1542796..1543053 (+) 258 WP_003154150.1 DUF3243 domain-containing protein -
  KHU1_RS07680 (KHU1_1491) - 1543181..1543972 (+) 792 WP_007409819.1 DUF3388 domain-containing protein -
  KHU1_RS07685 (KHU1_1492) - 1543991..1544890 (+) 900 WP_042635203.1 helix-turn-helix domain-containing protein -
  KHU1_RS07690 (KHU1_1493) pgsA 1544963..1545544 (+) 582 WP_007409821.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  KHU1_RS07695 (KHU1_1494) cinA 1545562..1546812 (+) 1251 WP_042635204.1 competence/damage-inducible protein A Machinery gene
  KHU1_RS07700 (KHU1_1495) recA 1546983..1548026 (+) 1044 WP_042635205.1 recombinase RecA Machinery gene
  KHU1_RS07705 (KHU1_1496) - 1548193..1549374 (+) 1182 WP_007409824.1 serine hydrolase domain-containing protein -
  KHU1_RS07710 (KHU1_1497) rny 1549667..1551226 (+) 1560 WP_003154140.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45014.32 Da        Isoelectric Point: 5.1492

>NTDB_id=118138 KHU1_RS07695 WP_042635204.1 1545562..1546812(+) (cinA) [Bacillus amyloliquefaciens KHG19]
MEIAKKAEIIAVGSELLLGQIANTNAQFISKELAEIGVNVFYHTAVGDNPERLKQVIRIAEERSDLIIFSGGLGPTKDDL
TKETIANTLGRPLVLNDEAFRSIEEYFAKTKRTMSPNNRKQALVIEGSDVLANHFGMAPGMLAEHGSRLYMLLPGPPSEL
RPMFENEAKPLLLKKLGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADEKETERLL
KETEAAILERVGEFFYGYDDTSLVKELSKACRQNGITISSAESFTGGLFSEWVTDLSGASQLFAGGVVCYSDSVKQHVLG
VKAETLAESGAVSKECAKELAAGVRKLTGSDIGISFTGVAGPDPQEGHAPGRVFIGIAAEGKEEVHEFNFAGSRTGIRKR
AAKYGCHLIMKMLDQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=118138 KHU1_RS07695 WP_042635204.1 1545562..1546812(+) (cinA) [Bacillus amyloliquefaciens KHG19]
ATGGAAATAGCGAAAAAAGCAGAAATCATTGCAGTCGGCTCGGAGCTTCTGCTCGGCCAGATCGCCAATACGAACGCGCA
GTTTATCAGTAAAGAGCTGGCGGAAATCGGTGTAAACGTGTTTTATCATACCGCTGTCGGTGACAATCCGGAGCGGCTTA
AGCAAGTCATCCGCATTGCCGAAGAGCGCTCAGACCTGATTATTTTTTCAGGCGGCCTCGGACCGACCAAGGACGATTTG
ACGAAAGAAACCATTGCAAACACACTGGGGCGTCCGCTCGTTCTGAATGACGAAGCATTCCGGTCGATCGAAGAATATTT
CGCGAAAACAAAACGGACCATGTCGCCGAATAACCGCAAACAGGCGCTCGTCATTGAGGGCTCAGACGTTTTGGCGAATC
ATTTCGGCATGGCGCCGGGAATGCTTGCAGAGCACGGCTCAAGGCTTTATATGCTGCTTCCCGGGCCGCCGAGCGAGCTG
CGTCCGATGTTTGAAAATGAAGCGAAGCCGCTGCTTCTTAAAAAGCTCGGTTCTAATGAGAAAATCGTTTCAACCGTGCT
GCGGTTTTTCGGAATCGGTGAATCCCAGCTTGAAGCTGATTTAGAAGATATTATTGATGCGCAGACGAACCCGACGATTG
CGCCGCTTGCTGCTGACGGAGAGGTCACGCTGCGTTTAACGGCGAAACATGCCGACGAAAAAGAAACAGAACGGCTTTTA
AAAGAAACGGAAGCCGCCATTTTAGAACGTGTCGGTGAATTTTTCTACGGATATGATGATACGTCTCTGGTGAAGGAGCT
TTCAAAAGCATGCAGACAAAACGGAATTACGATTTCCTCTGCCGAAAGCTTTACAGGCGGCCTGTTTTCAGAGTGGGTGA
CTGATTTAAGCGGTGCGTCTCAACTATTTGCAGGGGGCGTTGTCTGTTATTCCGACAGCGTGAAACAGCATGTGCTCGGC
GTGAAAGCTGAGACGCTCGCAGAAAGCGGAGCGGTCAGCAAAGAGTGTGCGAAAGAGCTTGCAGCCGGTGTGAGAAAGCT
GACCGGAAGCGATATCGGCATCAGCTTTACCGGGGTGGCGGGTCCCGACCCGCAGGAAGGGCATGCGCCGGGCCGCGTCT
TTATCGGCATTGCGGCGGAAGGAAAAGAAGAGGTGCACGAATTTAACTTTGCCGGCTCAAGAACCGGAATCAGAAAGCGC
GCCGCTAAATACGGCTGCCATCTCATTATGAAAATGCTGGATCAAAAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)

Competence-damaged protein (CinA)

(261-413)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

89.904

100

0.899
  cinA Streptococcus mitis NCTC 12261

48.086

100

0.483
  cinA Streptococcus mitis SK321

47.608

100

0.478
  cinA Streptococcus pneumoniae TIGR4

47.129

100

0.474
  cinA Streptococcus pneumoniae R6

47.129

100

0.474
  cinA Streptococcus pneumoniae Rx1

47.129

100

0.474
  cinA Streptococcus pneumoniae D39

46.89

100

0.471
  cinA Streptococcus mutans UA159

46.247

99.279

0.459
  cinA Streptococcus suis isolate S10

41.176

93.99

0.387

Multiple sequence alignment