Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DYB47_RS09220 Genome accession   NZ_UHFV01000002
Coordinates   1843044..1844198 (-) Length   384 a.a.
NCBI ID   WP_003081015.1    Uniprot ID   G5JWZ2
Organism   Streptococcus macacae NCTC 11558     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1838044..1849198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DYB47_RS09190 (NCTC11558_01865) - 1839161..1840729 (-) 1569 WP_115277023.1 DUF2079 domain-containing protein -
  DYB47_RS09200 (NCTC11558_01866) - 1841061..1841372 (-) 312 WP_003080359.1 DUF1292 domain-containing protein -
  DYB47_RS09205 (NCTC11558_01867) ruvX 1841420..1841839 (-) 420 WP_003082291.1 Holliday junction resolvase RuvX -
  DYB47_RS09210 (NCTC11558_01868) - 1841839..1842105 (-) 267 WP_003080921.1 IreB family regulatory phosphoprotein -
  DYB47_RS09215 (NCTC11558_01869) spx 1842561..1842959 (-) 399 WP_003079254.1 transcriptional regulator Spx -
  DYB47_RS09220 (NCTC11558_01870) recA 1843044..1844198 (-) 1155 WP_003081015.1 recombinase RecA Machinery gene
  DYB47_RS09225 (NCTC11558_01871) cinA 1844237..1845508 (-) 1272 WP_003079770.1 competence/damage-inducible protein A Machinery gene
  DYB47_RS09230 (NCTC11558_01872) - 1845668..1847581 (+) 1914 WP_003081804.1 ABC transporter ATP-binding protein/permease -
  DYB47_RS09235 (NCTC11558_01873) - 1847681..1848232 (-) 552 WP_003080355.1 DNA-3-methyladenine glycosylase I -
  DYB47_RS09240 (NCTC11558_01874) ruvA 1848341..1848931 (-) 591 WP_003080505.1 Holliday junction branch migration protein RuvA -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 41599.25 Da        Isoelectric Point: 5.1610

>NTDB_id=1171342 DYB47_RS09220 WP_003081015.1 1843044..1844198(-) (recA) [Streptococcus macacae NCTC 11558]
MAKRTKKTEEVTKKFGDDRRKALDDALKNIEKDFGKGAVMRLGERAEQKVQVMSSGSLALDIALGAGGYPKGRIIEIYGP
ESSGKTTVALHAVAQAQKDGGIAAFIDAEHALDPAYAAALGVNIDELLLSQPDSGEQGLEIAGKLIDSGAVDLVVVDSVA
ALVPRAEIDGDIGDSHVGLQARMMSQAMRKLSASINKTKTIAIFINQLREKVGIMFGNPETTPGGRALKFYSSVRLDVRG
NTQIKGSGDTKDANIGKETKIKVVKNKVAPPFKEAFVEIMYGEGISRTGELVKIASDLGIIQKAGAWYSYEGEKIGQGSE
NAKKFLAEHPQIFDAIDRKVRIHYGLIEEDEEEKQTTDSQRQESPEKDKKDLILELDDAIELED

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=1171342 DYB47_RS09220 WP_003081015.1 1843044..1844198(-) (recA) [Streptococcus macacae NCTC 11558]
TTGGCAAAACGAACAAAAAAAACAGAAGAAGTTACAAAAAAATTTGGCGATGATCGCCGTAAAGCTTTGGACGATGCTTT
AAAAAATATTGAAAAAGATTTTGGCAAGGGCGCTGTTATGCGCTTAGGCGAACGTGCTGAGCAAAAAGTTCAAGTAATGA
GCTCGGGCAGTCTAGCCTTAGATATTGCTTTAGGTGCAGGTGGCTATCCTAAAGGCCGGATTATCGAAATTTATGGCCCA
GAATCATCCGGGAAGACAACTGTTGCTCTTCATGCTGTAGCGCAAGCTCAAAAGGACGGAGGAATAGCTGCTTTTATTGA
TGCAGAGCATGCTTTAGATCCTGCCTATGCAGCAGCTTTAGGAGTAAATATTGACGAATTGCTTTTATCGCAACCTGATT
CAGGAGAGCAAGGCTTAGAAATTGCAGGGAAATTGATTGATTCAGGTGCAGTTGACTTAGTTGTCGTTGACTCTGTAGCA
GCTTTGGTTCCGCGTGCTGAAATTGATGGTGATATTGGTGATAGTCATGTTGGTTTGCAAGCGCGTATGATGAGTCAAGC
CATGCGTAAGCTATCAGCTTCTATTAATAAAACAAAGACAATTGCTATTTTTATCAATCAATTACGTGAAAAAGTTGGTA
TTATGTTTGGAAATCCTGAGACAACTCCAGGGGGACGCGCTTTAAAATTTTACTCATCAGTGCGGCTTGATGTCCGTGGA
AATACGCAGATTAAGGGTTCTGGTGATACTAAGGATGCTAATATTGGTAAGGAAACTAAAATTAAAGTTGTTAAAAATAA
AGTTGCACCGCCATTTAAAGAAGCATTCGTAGAAATTATGTATGGAGAAGGTATTTCTCGTACAGGTGAACTAGTCAAGA
TTGCCAGTGACTTAGGAATTATCCAAAAGGCTGGTGCATGGTATTCTTATGAAGGGGAAAAAATTGGACAGGGTTCCGAA
AATGCTAAAAAATTTTTAGCCGAACATCCCCAAATTTTTGATGCTATTGATCGCAAAGTACGTATTCACTATGGCCTTAT
TGAAGAGGATGAGGAAGAAAAACAAACGACTGATTCTCAAAGACAGGAAAGTCCAGAAAAAGATAAGAAGGATCTCATCT
TAGAGCTCGATGACGCTATTGAGCTTGAGGACTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(21-286)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G5JWZ2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Streptococcus mutans UA159

91.429

100

0.917
  recA Streptococcus pyogenes NZ131

86.719

100

0.867
  recA Streptococcus pneumoniae Rx1

83.161

100

0.836
  recA Streptococcus pneumoniae D39

83.161

100

0.836
  recA Streptococcus pneumoniae R6

83.161

100

0.836
  recA Streptococcus pneumoniae TIGR4

83.161

100

0.836
  recA Streptococcus mitis NCTC 12261

82.338

100

0.826
  recA Streptococcus mitis SK321

81.818

100

0.82
  recA Lactococcus lactis subsp. cremoris KW2

75.714

91.146

0.69
  recA Latilactobacillus sakei subsp. sakei 23K

68.116

89.844

0.612
  recA Bacillus subtilis subsp. subtilis str. 168

69.909

85.677

0.599
  recA Neisseria gonorrhoeae MS11

59.599

90.885

0.542
  recA Neisseria gonorrhoeae MS11

59.599

90.885

0.542
  recA Neisseria gonorrhoeae strain FA1090

59.599

90.885

0.542
  recA Acinetobacter baumannii D1279779

60.174

89.583

0.539
  recA Glaesserella parasuis strain SC1401

59.649

89.063

0.531
  recA Acinetobacter baylyi ADP1

62.154

84.635

0.526
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

59.587

88.281

0.526
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.92

84.115

0.521
  recA Vibrio cholerae strain A1552

60.615

84.635

0.513
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.615

84.635

0.513
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.006

86.198

0.5
  recA Helicobacter pylori 26695

57.186

86.979

0.497
  recA Helicobacter pylori strain NCTC11637

57.186

86.979

0.497
  recA Pseudomonas stutzeri DSM 10701

58.154

84.635

0.492
  recA Ralstonia pseudosolanacearum GMI1000

58.991

82.552

0.487

Multiple sequence alignment