Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   DYB47_RS09225 Genome accession   NZ_UHFV01000002
Coordinates   1844237..1845508 (-) Length   423 a.a.
NCBI ID   WP_003079770.1    Uniprot ID   -
Organism   Streptococcus macacae NCTC 11558     
Function   require for competence (predicted from homology)   
Unclear

Genomic Context

Location: 1839237..1850508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DYB47_RS09200 (NCTC11558_01866) - 1841061..1841372 (-) 312 WP_003080359.1 DUF1292 domain-containing protein -
  DYB47_RS09205 (NCTC11558_01867) ruvX 1841420..1841839 (-) 420 WP_003082291.1 Holliday junction resolvase RuvX -
  DYB47_RS09210 (NCTC11558_01868) - 1841839..1842105 (-) 267 WP_003080921.1 IreB family regulatory phosphoprotein -
  DYB47_RS09215 (NCTC11558_01869) spx 1842561..1842959 (-) 399 WP_003079254.1 transcriptional regulator Spx -
  DYB47_RS09220 (NCTC11558_01870) recA 1843044..1844198 (-) 1155 WP_003081015.1 recombinase RecA Machinery gene
  DYB47_RS09225 (NCTC11558_01871) cinA 1844237..1845508 (-) 1272 WP_003079770.1 competence/damage-inducible protein A Machinery gene
  DYB47_RS09230 (NCTC11558_01872) - 1845668..1847581 (+) 1914 WP_003081804.1 ABC transporter ATP-binding protein/permease -
  DYB47_RS09235 (NCTC11558_01873) - 1847681..1848232 (-) 552 WP_003080355.1 DNA-3-methyladenine glycosylase I -
  DYB47_RS09240 (NCTC11558_01874) ruvA 1848341..1848931 (-) 591 WP_003080505.1 Holliday junction branch migration protein RuvA -

Sequence

Protein


Download         Length: 423 a.a.        Molecular weight: 46306.13 Da        Isoelectric Point: 5.9802

>NTDB_id=1171343 DYB47_RS09225 WP_003079770.1 1844237..1845508(-) (cinA) [Streptococcus macacae NCTC 11558]
MKAEIIAVGTEILTGQIVNTNAQFLSEKFAELGIDVYFQTTVGDNEMRLLSILQIARSRSDLVVLCGGLGPTEDDLTKQT
LAKFLNRDLVFDTKANQRLDDFFASRPQYARTPNNERQAQIIAGSYPLQNTTGLAVGGMLKADGVTYVVLPGPPSELKPM
VLKSLVPLLLQSNQRLYSRVLRFFGIGESQLVTILSDLITGQTDPTIAPYAKTGEVTLRLSTKAQTQVQADAKLDQLEEQ
ILTVQTLEKNRLRDLLYGYGDDNSLPKVVFQLLKKKSQTLTAAESLTAGLFQANLADFPGSSQVFNGGYVTYSIKEKARM
LQIPLEDLQEHGVVSSFTAEKMAEQARILTESDLAVSLTGVAGPDELENQPAGTVFIGLATRKNVKSIKVVIGGRSRSDV
RKIAVLHAFNLIRQTLLSEENLV

Nucleotide


Download         Length: 1272 bp        

>NTDB_id=1171343 DYB47_RS09225 WP_003079770.1 1844237..1845508(-) (cinA) [Streptococcus macacae NCTC 11558]
ATGAAAGCAGAAATAATTGCAGTTGGAACAGAAATTCTAACTGGCCAGATAGTTAATACGAATGCCCAATTTTTATCAGA
AAAGTTTGCAGAGCTGGGAATTGATGTTTATTTCCAAACAACTGTTGGTGACAATGAAATGCGTCTTCTGTCTATTTTAC
AAATTGCTAGAAGCCGTAGTGATTTAGTCGTCCTTTGCGGCGGTTTGGGACCTACTGAAGATGATTTAACAAAACAGACT
TTAGCAAAATTTTTAAATCGAGATTTGGTATTTGATACTAAAGCAAATCAGCGTTTAGATGATTTTTTTGCAAGCCGGCC
GCAGTATGCCAGAACACCAAATAATGAACGTCAGGCACAAATAATAGCAGGTTCCTATCCCCTTCAAAATACGACTGGTC
TTGCTGTTGGAGGGATGCTGAAAGCAGATGGAGTAACTTATGTGGTTTTGCCTGGTCCGCCTAGTGAACTTAAACCGATG
GTTTTAAAATCTCTTGTGCCGTTGTTATTGCAAAGCAATCAAAGATTATATTCGCGCGTGCTTCGTTTTTTTGGTATTGG
TGAAAGCCAGTTAGTAACAATTTTGTCTGATTTAATTACAGGACAGACAGACCCTACAATAGCACCTTATGCTAAAACAG
GAGAAGTTACACTTCGCCTGTCAACTAAAGCTCAAACCCAAGTGCAAGCAGATGCTAAGTTAGATCAATTAGAAGAACAG
ATTTTAACAGTTCAGACACTTGAAAAAAATAGATTAAGAGACTTGCTTTATGGCTATGGAGATGATAATAGCCTGCCCAA
AGTAGTATTTCAATTGCTTAAGAAAAAAAGTCAAACACTTACAGCTGCAGAGAGTTTGACAGCGGGTTTGTTTCAGGCCA
ACTTAGCTGATTTTCCGGGTTCCTCTCAGGTTTTCAACGGTGGTTATGTCACTTACAGCATAAAAGAGAAAGCAAGAATG
CTGCAGATCCCTTTAGAGGATTTACAGGAACATGGCGTAGTCAGCAGTTTTACTGCTGAAAAAATGGCAGAGCAAGCACG
TATTTTAACGGAGTCTGATTTGGCCGTTAGCCTGACGGGGGTTGCTGGTCCAGATGAGTTGGAGAACCAGCCAGCAGGAA
CTGTTTTTATCGGTCTTGCTACTAGAAAAAATGTTAAGTCTATAAAGGTCGTTATTGGAGGACGAAGTCGTTCTGATGTA
CGGAAAATAGCGGTTTTACACGCTTTTAACCTGATACGCCAAACTTTATTATCTGAAGAAAATTTAGTATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(263-416)

Damage-inducible protein CinA KH domain (CinA_KH)

(178-241)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mutans UA159

75.887

100

0.759
  cinA Streptococcus mitis SK321

72.315

99.054

0.716
  cinA Streptococcus mitis NCTC 12261

71.36

99.054

0.707
  cinA Streptococcus pneumoniae TIGR4

70.406

99.054

0.697
  cinA Streptococcus pneumoniae Rx1

70.406

99.054

0.697
  cinA Streptococcus pneumoniae R6

70.406

99.054

0.697
  cinA Streptococcus pneumoniae D39

70.167

99.054

0.695
  cinA Streptococcus suis isolate S10

55.769

98.345

0.548
  cinA Bacillus subtilis subsp. subtilis str. 168

44.976

98.818

0.444

Multiple sequence alignment